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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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Journal Article

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APIScanner - Towards Automated Detection of Deprecated APIs in Python Libraries

by Vadlamani, Aparna, Kalicheti, Rishitha, Chimalakonda, Sridhar
Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)

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Conference Proceeding

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Development of Software Tools to Improve the Work of the Code Completion Mechanism Using Machine Learning Algorithms in an Integrated Development Environment for Python

Published in Vestnik NSU Series Information Technologies

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Journal Article

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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

by Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)

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Journal Article

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Machine Learning Guide for Oil and Gas Using Python - A Step-by-Step Breakdown with Data, Algorithms, Codes, and Applications

by Belyadi, Hoss, Haghighat, Alireza
Year of Publication 2021

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eBook

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Biotite: a unifying open source computational biology framework in Python

by Kunzmann, Patrick, Hamacher, Kay
Published in BMC bioinformatics (01.10.2018)

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Journal Article

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Pytrf: a python package for finding tandem repeats from genomic sequences

by Du, Lianming, Sun, Dalin, Chen, Jiahao, Zhou, Xinyi, Zhao, Kelei, Zeng, Qianglin, Yang, Nan
Published in BMC bioinformatics (04.06.2025)

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Journal Article

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PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces

by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)

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Journal Article

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Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data

by ElAbd, Hesham, Degenhardt, Frauke, Koudelka, Tomas, Kamps, Ann-Kristin, Tholey, Andreas, Bacher, Petra, Lenz, Tobias L., Franke, Andre, Wendorff, Mareike
Published in BMC bioinformatics (17.08.2021)

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Journal Article

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Bridging Python to Silicon: The SODA Toolchain

by Agostini, Nicolas Bohm, Curzel, Serena, Zhang, Jeff Jun, Limaye, Ankur, Tan, Cheng, Amatya, Vinay, Minutoli, Marco, Castellana, Vito Giovanni, Manzano, Joseph, Brooks, David, Wei, Gu-Yeon, Tumeo, Antonino
Published in IEEE MICRO (01.09.2022)

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Journal Article

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Ab Initio Multiple Spawning Nonadiabatic Dynamics with Different CASPT2 Flavors: A Fully Open-Source PySpawn/OpenMolcas Interface

by Ibele, Lea M., Memhood, Arshad, Levine, Benjamin G., Avagliano, Davide
Published in Journal of chemical theory and computation (04.09.2024)

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Journal Article

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Shooting the Numerical Solution of Moisture Flow Equation with Root Water Uptake Models: A Python Tool

by Difonzo, Fabio V., Masciopinto, Costantino, Vurro, Michele, Berardi, Marco
Published in Water resources management (01.06.2021)

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Journal Article

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PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins

by Marrama, Daniel, Chronister, William D., Westernberg, Luise, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Sette, Alessandro, Nielsen, Morten, Greenbaum, Jason A., Peters, Bjoern
Published in BMC bioinformatics (18.12.2023)

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Journal Article

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Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS

by Vieira, Ivo Henrique Provensi, Botelho, Eduardo Buganemi, de Souza Gomes, Thales Junior, Kist, Roger, Caceres, Rafael Andrade, Zanchi, Fernando Berton
Published in BMC bioinformatics (22.03.2023)

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Journal Article

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svist4get: a simple visualization tool for genomic tracks from sequencing experiments

by Egorov, Artyom A., Sakharova, Ekaterina A., Anisimova, Aleksandra S., Dmitriev, Sergey E., Gladyshev, Vadim N., Kulakovskiy, Ivan V.
Published in BMC bioinformatics (06.03.2019)

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Journal Article

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New Python-based methods for data processing

by Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)

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Journal Article

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Glycosylator: a Python framework for the rapid modeling of glycans

by Lemmin, Thomas, Soto, Cinque
Published in BMC bioinformatics (22.10.2019)

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Journal Article

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diffSph: a Python tool to compute diffuse signals from dwarf spheroidal galaxies

by Vollmann, Martin, Welzmüller, Finn, Gajović, Lovorka
Published in Journal of cosmology and astroparticle physics (01.12.2024)

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Journal Article

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Noisecut: a python package for noise-tolerant classification of binary data using prior knowledge integration and max-cut solutions

by Samadi, Moein E., Mirzaieazar, Hedieh, Mitsos, Alexander, Schuppert, Andreas
Published in BMC bioinformatics (20.04.2024)

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Journal Article

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A conversion tool for translating Python-based machine learning models to structured text codes

by Campos, Yasmin Adriane de Paula, Pereira, Paulo Haron da Silva, Duarte, Robson Aparecido, Perez, José Manuel Gonzalez Túbio, Pessin, Gustavo, Pinto, Thomas Vargas Barsante
Published in SoftwareX (01.02.2025)

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Journal Article

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