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SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
The atomic simulation environment-a Python library for working with atoms
Hjorth Larsen, Ask, Jørgen Mortensen, Jens, Blomqvist, Jakob, Castelli, Ivano E, Christensen, Rune, Du ak, Marcin, Friis, Jesper, Groves, Michael N, Hammer, Bjørk, Hargus, Cory, Hermes, Eric D, Jennings, Paul C, Bjerre Jensen, Peter, Kermode, James, Kitchin, John R, Leonhard Kolsbjerg, Esben, Kubal, Joseph, Kaasbjerg, Kristen, Lysgaard, Steen, Bergmann Maronsson, Jón, Maxson, Tristan, Olsen, Thomas, Pastewka, Lars, Peterson, Andrew, Rostgaard, Carsten, Schiøtz, Jakob, Schütt, Ole, Strange, Mikkel, Thygesen, Kristian S, Vegge, Tejs, Vilhelmsen, Lasse, Walter, Michael, Zeng, Zhenhua, Jacobsen, Karsten W
Published in Journal of physics. Condensed matter (12.07.2017)
Published in Journal of physics. Condensed matter (12.07.2017)
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Journal Article
Probabilistic programming in Python using PyMC3
Salvatier, John, Wiecki, Thomas V., Fonnesbeck, Christopher
Published in PeerJ. Computer science (06.04.2016)
Published in PeerJ. Computer science (06.04.2016)
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Journal Article
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics
Egea, Jose A, Henriques, David, Cokelaer, Thomas, Villaverde, Alejandro F, MacNamara, Aidan, Danciu, Diana-Patricia, Banga, Julio R, Saez-Rodriguez, Julio
Published in BMC bioinformatics (10.05.2014)
Published in BMC bioinformatics (10.05.2014)
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Journal Article
PyRates—A code-generation tool for modeling dynamical systems in biology and beyond
Gast, Richard, Knösche, Thomas R., Kennedy, Ann
Published in PLoS computational biology (27.12.2023)
Published in PLoS computational biology (27.12.2023)
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Journal Article
Non-circular signals for nested array: sum–difference co-array and direction of arrival estimation algorithm
Yunfei, Wang, Jinqing, Shen, Xiaofei, Zhang, Yi, He, Xiangrui, Dai
Published in IET radar, sonar & navigation (01.01.2020)
Published in IET radar, sonar & navigation (01.01.2020)
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Journal Article
PyGeNN: A Python Library for GPU-Enhanced Neural Networks
Knight, James C., Komissarov, Anton, Nowotny, Thomas
Published in Frontiers in neuroinformatics (22.04.2021)
Published in Frontiers in neuroinformatics (22.04.2021)
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Journal Article
HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes
Adams, Thomas M., Smith, Moray, Wang, Yuhan, Brown, Lynn H., Bayer, Micha M., Hein, Ingo
Published in BMC bioinformatics (17.05.2023)
Published in BMC bioinformatics (17.05.2023)
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Journal Article
OPARC: Optimal and Precise Array Response Control Algorithm-Part I: Fundamentals
Zhang, Xuejing, He, Zishu, Xia, Xiang-Gen, Liao, Bin, Zhang, Xuepan, Yang, Yue
Published in IEEE transactions on signal processing (01.02.2019)
Published in IEEE transactions on signal processing (01.02.2019)
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Journal Article
The AlpArray Research Seismicity-Catalogue
Bagagli, M, Molinari, I, Diehl, T, Kissling, E, Giardini, D
Published in Geophysical journal international (23.07.2022)
Published in Geophysical journal international (23.07.2022)
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Journal Article
Improved DOA estimation algorithm for co-prime linear arrays using root-MUSIC algorithm
Zhang, Dong, Zhang, Yongshun, Zheng, Guimei, Feng, Cunqian, Tang, Jun
Published in Electronics letters (31.08.2017)
Published in Electronics letters (31.08.2017)
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Journal Article
A model-based circular binary segmentation algorithm for the analysis of array CGH data
Hsu, Fang-Han, Chen, Hung-I H, Tsai, Mong-Hsun, Lai, Liang-Chuan, Huang, Chi-Cheng, Tu, Shih-Hsin, Chuang, Eric Y, Chen, Yidong
Published in BMC research notes (10.10.2011)
Published in BMC research notes (10.10.2011)
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Journal Article
A conversion tool for translating Python-based machine learning models to structured text codes
Campos, Yasmin Adriane de Paula, Pereira, Paulo Haron da Silva, Duarte, Robson Aparecido, Perez, José Manuel Gonzalez Túbio, Pessin, Gustavo, Pinto, Thomas Vargas Barsante
Published in SoftwareX (01.02.2025)
Published in SoftwareX (01.02.2025)
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Journal Article