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    SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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          ISMRM Raw data format: A proposed standard for MRI raw datasets
                                      
                                            Inati, Souheil J.,                              Naegele, Joseph D.,                              Zwart, Nicholas R.,                              Roopchansingh, Vinai,                              Lizak, Martin J.,                              Hansen, David C.,                              Liu, Chia‐Ying,                              Atkinson, David,                              Kellman, Peter,                              Kozerke, Sebastian,                              Xue, Hui,                              Campbell‐Washburn, Adrienne E.,                              Sørensen, Thomas S.,                              Hansen, Michael S.                              
Published in Magnetic resonance in medicine (01.01.2017)
                   
      
      
                                                  Published in Magnetic resonance in medicine (01.01.2017)
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          Combinatorial Conflicting Homozygosity (CCH) analysis enables the rapid identification of shared genomic regions in the presence of multiple phenocopies
                                      
                                            Levine, Adam P,                              Connor, Thomas M F,                              Oygar, D Deren,                              Neild, Guy H,                              Segal, Anthony W,                              Maxwell, Patrick H,                              Gale, Daniel P                              
Published in BMC genomics (10.03.2015)
                   
      
      
                                                  Published in BMC genomics (10.03.2015)
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          Probabilistic programming in Python using PyMC3
                                      
                                            Salvatier, John,                              Wiecki, Thomas V.,                              Fonnesbeck, Christopher                              
Published in PeerJ. Computer science (06.04.2016)
                   
      
      
                                                  Published in PeerJ. Computer science (06.04.2016)
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          MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics
                                      
                                            Egea, Jose A,                              Henriques, David,                              Cokelaer, Thomas,                              Villaverde, Alejandro F,                              MacNamara, Aidan,                              Danciu, Diana-Patricia,                              Banga, Julio R,                              Saez-Rodriguez, Julio                              
Published in BMC bioinformatics (10.05.2014)
                   
      
      
                                                  Published in BMC bioinformatics (10.05.2014)
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          Hidden Markov modeling for maximum probability neuron reconstruction
                                      
                                            Athey, Thomas L.,                              Tward, Daniel J.,                              Mueller, Ulrich,                              Vogelstein, Joshua T.,                              Miller, Michael I.                              
Published in Communications biology (25.04.2022)
                   
      
      
                                                  Published in Communications biology (25.04.2022)
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          PyRates—A code-generation tool for modeling dynamical systems in biology and beyond
                                      
                                            Gast, Richard,                              Knösche, Thomas R.,                              Kennedy, Ann                              
Published in PLoS computational biology (27.12.2023)
                   
      
      
                                                  Published in PLoS computational biology (27.12.2023)
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          Structural homology guided alignment of cysteine rich proteins
                                      
                                            Shafee, Thomas M. A.,                              Robinson, Andrew J.,                              van der Weerden, Nicole,                              Anderson, Marilyn A.                              
Published in SpringerPlus (12.01.2016)
                   
      
      
                                                  Published in SpringerPlus (12.01.2016)
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          PyGeNN: A Python Library for GPU-Enhanced Neural Networks
                                      
                                            Knight, James C.,                              Komissarov, Anton,                              Nowotny, Thomas                              
Published in Frontiers in neuroinformatics (22.04.2021)
                   
      
      
                                                  Published in Frontiers in neuroinformatics (22.04.2021)
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          The AlpArray Research Seismicity-Catalogue
                                      
                                            Bagagli, M,                              Molinari, I,                              Diehl, T,                              Kissling, E,                              Giardini, D                              
Published in Geophysical journal international (23.07.2022)
                   
      
      
                                                  Published in Geophysical journal international (23.07.2022)
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          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          The atomic simulation environment-a Python library for working with atoms
                                      
                                            Hjorth Larsen, Ask,                              Jørgen Mortensen, Jens,                              Blomqvist, Jakob,                              Castelli, Ivano E,                              Christensen, Rune,                              Du ak, Marcin,                              Friis, Jesper,                              Groves, Michael N,                              Hammer, Bjørk,                              Hargus, Cory,                              Hermes, Eric D,                              Jennings, Paul C,                              Bjerre Jensen, Peter,                              Kermode, James,                              Kitchin, John R,                              Leonhard Kolsbjerg, Esben,                              Kubal, Joseph,                              Kaasbjerg, Kristen,                              Lysgaard, Steen,                              Bergmann Maronsson, Jón,                              Maxson, Tristan,                              Olsen, Thomas,                              Pastewka, Lars,                              Peterson, Andrew,                              Rostgaard, Carsten,                              Schiøtz, Jakob,                              Schütt, Ole,                              Strange, Mikkel,                              Thygesen, Kristian S,                              Vegge, Tejs,                              Vilhelmsen, Lasse,                              Walter, Michael,                              Zeng, Zhenhua,                              Jacobsen, Karsten W                              
Published in Journal of physics. Condensed matter (12.07.2017)
                   
      
      
                                                  Published in Journal of physics. Condensed matter (12.07.2017)
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