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Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples
Gyorffy, Balazs, Molnar, Bela, Lage, Hermann, Szallasi, Zoltan, Eklund, Aron C.
Published in PloS one (21.05.2009)
Published in PloS one (21.05.2009)
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Journal Article
Technology dictates algorithms: recent developments in read alignment
Alser, Mohammed, Rotman, Jeremy, Deshpande, Dhrithi, Taraszka, Kodi, Shi, Huwenbo, Baykal, Pelin Icer, Yang, Harry Taegyun, Xue, Victor, Knyazev, Sergey, Singer, Benjamin D., Balliu, Brunilda, Koslicki, David, Skums, Pavel, Zelikovsky, Alex, Alkan, Can, Mutlu, Onur, Mangul, Serghei
Published in Genome Biology (26.08.2021)
Published in Genome Biology (26.08.2021)
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Journal Article
Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets
Xu, Xiao, Zhang, Yuanhao, Williams, Jennie, Antoniou, Eric, McCombie, W Richard, Wu, Song, Zhu, Wei, Davidson, Nicholas O, Denoya, Paula, Li, Ellen
Published in BMC bioinformatics (28.06.2013)
Published in BMC bioinformatics (28.06.2013)
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Journal Article
Pangenomic genotyping with the marker array
Mun, Taher, Vaddadi, Naga Sai Kavya, Langmead, Ben
Published in Algorithms for molecular biology (05.05.2023)
Published in Algorithms for molecular biology (05.05.2023)
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Journal Article
Analysis and correction of compositional bias in sparse sequencing count data
Kumar, M. Senthil, Slud, Eric V., Okrah, Kwame, Hicks, Stephanie C., Hannenhalli, Sridhar, Corrada Bravo, Héctor
Published in BMC genomics (06.11.2018)
Published in BMC genomics (06.11.2018)
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Journal Article
Machine learning overcomes human bias in the discovery of self-assembling peptides
Batra, Rohit, Loeffler, Troy D., Chan, Henry, Srinivasan, Srilok, Cui, Honggang, Korendovych, Ivan V., Nanda, Vikas, Palmer, Liam C., Solomon, Lee A., Fry, H. Christopher, Sankaranarayanan, Subramanian K. R. S.
Published in Nature chemistry (01.12.2022)
Published in Nature chemistry (01.12.2022)
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Journal Article
Integration of microarray data and literature mining identifies a sex bias in DPP4+CD4+ T cells in HIV-1 infection
Stubbe, Hans Christian, Dahlke, Christine, Rotheneder, Katharina, Stirner, Renate, Roider, Julia, Conca, Raffaele, Seybold, Ulrich, Bogner, Johannes, Addo, Marylyn Martina, Draenert, Rika
Published in PloS one (18.09.2020)
Published in PloS one (18.09.2020)
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Journal Article
Non-circular signals for nested array: sum–difference co-array and direction of arrival estimation algorithm
Yunfei, Wang, Jinqing, Shen, Xiaofei, Zhang, Yi, He, Xiangrui, Dai
Published in IET radar, sonar & navigation (01.01.2020)
Published in IET radar, sonar & navigation (01.01.2020)
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Journal Article
Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias
Didion, John P, Yang, Hyuna, Sheppard, Keith, Fu, Chen-Ping, McMillan, Leonard, de Villena, Fernando Pardo-Manuel, Churchill, Gary A
Published in BMC genomics (19.01.2012)
Published in BMC genomics (19.01.2012)
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Journal Article
OPARC: Optimal and Precise Array Response Control Algorithm-Part I: Fundamentals
Zhang, Xuejing, He, Zishu, Xia, Xiang-Gen, Liao, Bin, Zhang, Xuepan, Yang, Yue
Published in IEEE transactions on signal processing (01.02.2019)
Published in IEEE transactions on signal processing (01.02.2019)
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Journal Article
Sequence-specific bias correction for RNA-seq data using recurrent neural networks
Zhang, Yao-zhong, Yamaguchi, Rui, Imoto, Seiya, Miyano, Satoru
Published in BMC genomics (25.01.2017)
Published in BMC genomics (25.01.2017)
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Journal Article
Avoiding the pitfalls of gene set enrichment analysis with SetRank
Simillion, Cedric, Liechti, Robin, Lischer, Heidi E.L., Ioannidis, Vassilios, Bruggmann, Rémy
Published in BMC bioinformatics (04.03.2017)
Published in BMC bioinformatics (04.03.2017)
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Journal Article
Efficient analysis of large datasets and sex bias with ADMIXTURE
Shringarpure, Suyash S., Bustamante, Carlos D., Lange, Kenneth, Alexander, David H.
Published in BMC bioinformatics (23.05.2016)
Published in BMC bioinformatics (23.05.2016)
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Journal Article
Improved DOA estimation algorithm for co-prime linear arrays using root-MUSIC algorithm
Zhang, Dong, Zhang, Yongshun, Zheng, Guimei, Feng, Cunqian, Tang, Jun
Published in Electronics letters (31.08.2017)
Published in Electronics letters (31.08.2017)
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Journal Article
Characterizing dye bias in microarray experiments
Dobbin, K. K., Kawasaki, E. S., Petersen, D. W., Simon, R. M.
Published in Bioinformatics (15.05.2005)
Published in Bioinformatics (15.05.2005)
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Journal Article
Comprehensive high-throughput arrays for relative methylation (CHARM)
Irizarry, Rafael A., Ladd-Acosta, Christine, Carvalho, Benilton, Wu, Hao, Brandenburg, Sheri A., Jeddeloh, Jeffrey A., Wen, Bo, Feinberg, Andrew P.
Published in Genome Research (01.05.2008)
Published in Genome Research (01.05.2008)
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Journal Article