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    Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus
                                      
                                            Bell, Christopher G.,                              Finer, Sarah,                              Lindgren, Cecilia M.,                              Wilson, Gareth A.,                              Rakyan, Vardhman K.,                              Teschendorff, Andrew E.,                              Akan, Pelin,                              Stupka, Elia,                              Down, Thomas A.,                              Prokopenko, Inga,                              Morison, Ian M.,                              Mill, Jonathan,                              Pidsley, Ruth,                              Deloukas, Panos,                              Frayling, Timothy M.,                              Hattersley, Andrew T.,                              McCarthy, Mark I.,                              Beck, Stephan,                              Hitman, Graham A.                              
Published in PloS one (18.11.2010)
                   
      
      
                                                  Published in PloS one (18.11.2010)
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          Gene selection for cancer identification: a decision tree model empowered by particle swarm optimization algorithm
                                      
                                            Chen, Kun-Huang,                              Wang, Kung-Jeng,                              Tsai, Min-Lung,                              Wang, Kung-Min,                              Adrian, Angelia Melani,                              Cheng, Wei-Chung,                              Yang, Tzu-Sen,                              Teng, Nai-Chia,                              Tan, Kuo-Pin,                              Chang, Ku-Shang                              
Published in BMC bioinformatics (20.02.2014)
                   
      
      
                                                  Published in BMC bioinformatics (20.02.2014)
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          A business process clustering algorithm using incremental covering arrays to explore search space and balanced Bayesian information criterion to evaluate quality of solutions
                                      
                                            Ordoñez, Hugo,                              Torres-Jimenez, Jose,                              Cobos, Carlos,                              Ordoñez, Armando,                              Herrera-Viedma, Enrique,                              Maldonado-Martinez, Gildardo                              
Published in PloS one (13.06.2019)
                   
      
      
                                                  Published in PloS one (13.06.2019)
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          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions
                                      
                                            Liu, Bin,                              Yi, Jimmy,                              SV, Aishwarya,                              Lan, Xun,                              Ma, Yilin,                              Huang, Tim HM,                              Leone, Gustavo,                              Jin, Victor X                              
Published in BMC genomics (09.12.2013)
                   
      
      
                                                  Published in BMC genomics (09.12.2013)
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          Integrating biological knowledge into variable selection: an empirical Bayes approach with an application in cancer biology
                                      
                                            Hill, Steven M,                              Neve, Richard M,                              Bayani, Nora,                              Kuo, Wen-Lin,                              Ziyad, Safiyyah,                              Spellman, Paul T,                              Gray, Joe W,                              Mukherjee, Sach                              
Published in BMC bioinformatics (11.05.2012)
                   
      
      
                                                  Published in BMC bioinformatics (11.05.2012)
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          Genetic Structure, Linkage Disequilibrium and Signature of Selection in Sorghum: Lessons from Physically Anchored DArT Markers
                                      
                                            Bouchet, Sophie,                              Pot, David,                              Deu, Monique,                              Rami, Jean-François,                              Billot, Claire,                              Perrier, Xavier,                              Rivallan, Ronan,                              Gardes, Laëtitia,                              Xia, Ling,                              Wenzl, Peter,                              Kilian, Andrzej,                              Glaszmann, Jean-Christophe                              
Published in PloS one (13.03.2012)
                   
      
      
                                                  Published in PloS one (13.03.2012)
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          A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
                                      
                                            Down, Thomas A,                              Rakyan, Vardhman K,                              Turner, Daniel J,                              Flicek, Paul,                              Li, Heng,                              Kulesha, Eugene,                              Gräf, Stefan,                              Johnson, Nathan,                              Herrero, Javier,                              Tomazou, Eleni M,                              Thorne, Natalie P,                              Bäckdahl, Liselotte,                              Herberth, Marlis,                              Howe, Kevin L,                              Jackson, David K,                              Miretti, Marcos M,                              Marioni, John C,                              Birney, Ewan,                              Hubbard, Tim J P,                              Durbin, Richard,                              Tavaré, Simon,                              Beck, Stephan                              
Published in Nature biotechnology (01.07.2008)
                   
      
      
                                                  Published in Nature biotechnology (01.07.2008)
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          Fast, Scalable, Bayesian Spike Identification for Multi-Electrode Arrays
                                      
                                            Prentice, Jason S.,                              Homann, Jan,                              Simmons, Kristina D.,                              Tkačik, Gašper,                              Balasubramanian, Vijay,                              Nelson, Philip C.                              
Published in PloS one (20.07.2011)
                   
      
      
                                                  Published in PloS one (20.07.2011)
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          Correlation Network Analysis Applied to Complex Biofilm Communities
                                      
                                            Duran-Pinedo, Ana E.,                              Paster, Bruce,                              Teles, Ricardo,                              Frias-Lopez, Jorge                              
Published in PloS one (07.12.2011)
                   
      
      
                                                  Published in PloS one (07.12.2011)
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          Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information
                                      
                                            Giorgi, Federico M.,                              Lopez, Gonzalo,                              Woo, Jung H.,                              Bisikirska, Brygida,                              Califano, Andrea,                              Bansal, Mukesh                              
Published in PloS one (14.10.2014)
                   
      
      
                                                  Published in PloS one (14.10.2014)
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          BACOM: in silico detection of genomic deletion types and correction of normal cell contamination in copy number data
                                      
                                            Yu, Guoqiang,                              Zhang, Bai,                              Bova, G. Steven,                              Xu, Jianfeng,                              Shih, Ie−Ming,                              Wang, Yue                              
Published in Bioinformatics (01.06.2011)
                   
      
      
                                                  Published in Bioinformatics (01.06.2011)
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          Simultaneous inferences based on empirical Bayes methods and false discovery rates ineQTL data analysis
                                      
                                            Chakraborty, Arindom,                              Jiang, Guanglong,                              Boustani, Malaz,                              Liu, Yunlong,                              Skaar, Todd,                              Li, Lang                              
Published in BMC genomics (09.12.2013)
                   
      
      
                                                  Published in BMC genomics (09.12.2013)
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          NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads
                                      
                                            Rosen, Gail L.,                              Reichenberger, Erin R.,                              Rosenfeld, Aaron M.                              
Published in Bioinformatics (01.01.2011)
                   
      
      
                                                  Published in Bioinformatics (01.01.2011)
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