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Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus
Bell, Christopher G., Finer, Sarah, Lindgren, Cecilia M., Wilson, Gareth A., Rakyan, Vardhman K., Teschendorff, Andrew E., Akan, Pelin, Stupka, Elia, Down, Thomas A., Prokopenko, Inga, Morison, Ian M., Mill, Jonathan, Pidsley, Ruth, Deloukas, Panos, Frayling, Timothy M., Hattersley, Andrew T., McCarthy, Mark I., Beck, Stephan, Hitman, Graham A.
Published in PloS one (18.11.2010)
Published in PloS one (18.11.2010)
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Journal Article
Gene selection for cancer identification: a decision tree model empowered by particle swarm optimization algorithm
Chen, Kun-Huang, Wang, Kung-Jeng, Tsai, Min-Lung, Wang, Kung-Min, Adrian, Angelia Melani, Cheng, Wei-Chung, Yang, Tzu-Sen, Teng, Nai-Chia, Tan, Kuo-Pin, Chang, Ku-Shang
Published in BMC bioinformatics (20.02.2014)
Published in BMC bioinformatics (20.02.2014)
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Journal Article
SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction
Wee, Lawrence JK, Simarmata, Diane, Kam, Yiu-Wing, Ng, Lisa FP, Tong, Joo Chuan
Published in BMC genomics (02.12.2010)
Published in BMC genomics (02.12.2010)
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Journal Article
Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments
Sartor, Maureen A, Tomlinson, Craig R, Wesselkamper, Scott C, Sivaganesan, Siva, Leikauf, George D, Medvedovic, Mario
Published in BMC bioinformatics (19.12.2006)
Published in BMC bioinformatics (19.12.2006)
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Journal Article
A business process clustering algorithm using incremental covering arrays to explore search space and balanced Bayesian information criterion to evaluate quality of solutions
Ordoñez, Hugo, Torres-Jimenez, Jose, Cobos, Carlos, Ordoñez, Armando, Herrera-Viedma, Enrique, Maldonado-Martinez, Gildardo
Published in PloS one (13.06.2019)
Published in PloS one (13.06.2019)
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Journal Article
A Bayesian gene network reveals insight into the JAK-STAT pathway in systemic lupus erythematosus
Li, Yupeng, Higgs, Richard E., Hoffman, Robert W., Dow, Ernst R., Liu, Xiong, Petri, Michelle, Wallace, Daniel J., Dörner, Thomas, Eastwood, Brian J., Miller, Bradley B., Liu, Yushi
Published in PloS one (02.12.2019)
Published in PloS one (02.12.2019)
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Journal Article
Assessing Differential Expression in Two-Color Microarrays: A Resampling-Based Empirical Bayes Approach
Li, Dongmei, Le Pape, Marc A., Parikh, Nisha I., Chen, Will X., Dye, Timothy D.
Published in PloS one (27.11.2013)
Published in PloS one (27.11.2013)
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Journal Article
QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions
Liu, Bin, Yi, Jimmy, SV, Aishwarya, Lan, Xun, Ma, Yilin, Huang, Tim HM, Leone, Gustavo, Jin, Victor X
Published in BMC genomics (09.12.2013)
Published in BMC genomics (09.12.2013)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Integrating biological knowledge into variable selection: an empirical Bayes approach with an application in cancer biology
Hill, Steven M, Neve, Richard M, Bayani, Nora, Kuo, Wen-Lin, Ziyad, Safiyyah, Spellman, Paul T, Gray, Joe W, Mukherjee, Sach
Published in BMC bioinformatics (11.05.2012)
Published in BMC bioinformatics (11.05.2012)
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Journal Article
Accelerating Bayesian Hierarchical Clustering of Time Series Data with a Randomised Algorithm
Darkins, Robert, Cooke, Emma J., Ghahramani, Zoubin, Kirk, Paul D. W., Wild, David L., Savage, Richard S.
Published in PloS one (02.04.2013)
Published in PloS one (02.04.2013)
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Journal Article