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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing
Duez, Marc, Giraud, Mathieu, Herbert, Ryan, Rocher, Tatiana, Salson, Mikaël, Thonier, Florian
Published in PloS one (11.11.2016)
Published in PloS one (11.11.2016)
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Journal Article
LibSBML: an API Library for SBML
Bornstein, Benjamin J., Keating, Sarah M., Jouraku, Akiya, Hucka, Michael
Published in Bioinformatics (15.03.2008)
Published in Bioinformatics (15.03.2008)
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Journal Article
Design of a Saving-Energy Fuzzy Logic Controller for a Differential Drive Robot Based on an Optimization
Pham, Van Thuan, Stefek, Alexandr, Krivanek, Vaclav, Nguyen, Thi Son
Published in Applied sciences (01.01.2023)
Published in Applied sciences (01.01.2023)
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Journal Article
Image processing for electron microscopy single-particle analysis using XMIPP
Scheres, Sjors H W, Núñez-Ramírez, Rafael, Sorzano, Carlos O S, Carazo, José María, Marabini, Roberto
Published in Nature protocols (01.06.2008)
Published in Nature protocols (01.06.2008)
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Journal Article
Application of machine-learning algorithms for tephrochronology: a case study of Plio-Quaternary volcanic fields in the South Aegean Active Volcanic Arc
Uslular, Göksu, Kıyıkçı, Fatih, Karaarslan, Enis, Kuşcu, Gonca Gençalioğlu
Published in Earth science informatics (01.06.2022)
Published in Earth science informatics (01.06.2022)
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Journal Article
A Severity Assessment of Python Code Smells
Gupta, Aakanshi, Gandhi, Rashmi, Jatana, Nishtha, Jatain, Divya, Panda, Sandeep Kumar, Ramesh, Janjhyam Venkata Naga
Published in IEEE access (01.01.2023)
Published in IEEE access (01.01.2023)
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Journal Article
Toward a unified framework for interpreting machine-learning models in neuroimaging
Kohoutová, Lada, Heo, Juyeon, Cha, Sungmin, Lee, Sungwoo, Moon, Taesup, Wager, Tor D., Woo, Choong-Wan
Published in Nature protocols (01.04.2020)
Published in Nature protocols (01.04.2020)
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Journal Article
Simulated annealing aided genetic algorithm for gene selection from microarray data
Marjit, Shyam, Bhattacharyya, Trinav, Chatterjee, Bitanu, Sarkar, Ram
Published in Computers in biology and medicine (01.05.2023)
Published in Computers in biology and medicine (01.05.2023)
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Journal Article
Portable BLAST-like algorithm library and its implementations for command line, Python, and R
Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)
Published in PloS one (30.11.2023)
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Journal Article