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    Band structure diagram paths based on crystallography
                                      
                                            Hinuma, Yoyo,                              Pizzi, Giovanni,                              Kumagai, Yu,                              Oba, Fumiyasu,                              Tanaka, Isao                              
Published in Computational materials science (15.02.2017)
                   
      
      
                                                  Published in Computational materials science (15.02.2017)
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              Journal Article
          
              
          A Contribution of Shortest Paths Algorithms to the NetworkX Python Library
                                      
                                            Cruz, Miguel,                              Carvalho, Rui,                              Costa, André,                              Pinto, Luis,                              Dias, Luis,                              Cerqueira, Paulino,                              Machado, Rodrigo,                              Batista, Tiago,                              Castro, Pedro,                              Ribeiro, Jorge                              
Published in Applied sciences (25.07.2025)
                   
      
      
                                                  Published in Applied sciences (25.07.2025)
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          YSMR: a video tracking and analysis program for bacterial motility
                                      
                                            Schwanbeck, Julian,                              Oehmig, Ines,                              Dretzke, Jerôme,                              Zautner, Andreas E.,                              Groß, Uwe,                              Bohne, Wolfgang                              
Published in BMC bioinformatics (29.04.2020)
                   
      
      
                                                  Published in BMC bioinformatics (29.04.2020)
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              Journal Article
          
              
          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          Wordom: A user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces
                                      
                                            Seeber, Michele,                              Felline, Angelo,                              Raimondi, Francesco,                              Muff, Stefanie,                              Friedman, Ran,                              Rao, Francesco,                              Caflisch, Amedeo,                              Fanelli, Francesca                              
Published in Journal of computational chemistry (30.04.2011)
                   
      
      
                                                  Published in Journal of computational chemistry (30.04.2011)
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          Reaction Mechanism Generator: Automatic construction of chemical kinetic mechanisms
                                      
                                            Gao, Connie W.,                              Allen, Joshua W.,                              Green, William H.,                              West, Richard H.                              
Published in Computer physics communications (01.06.2016)
                   
      
      
                                                  Published in Computer physics communications (01.06.2016)
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          Real Time Collision free Robot Path planning in Dynamic Space
                                      
                                            Javan, Sobhan,                              Babazadeh, Hadiseh                              
Published in The ... CSI International Symposium on Artificial Intelligence & Signal Processing (Online) (21.02.2024)
                   
      
      
                                                  Published in The ... CSI International Symposium on Artificial Intelligence & Signal Processing (Online) (21.02.2024)
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              Conference Proceeding
          
              
          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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          Hidden Markov modeling for maximum probability neuron reconstruction
                                      
                                            Athey, Thomas L.,                              Tward, Daniel J.,                              Mueller, Ulrich,                              Vogelstein, Joshua T.,                              Miller, Michael I.                              
Published in Communications biology (25.04.2022)
                   
      
      
                                                  Published in Communications biology (25.04.2022)
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          Computational Methods for Tracking, Quantitative Assessment, and Visualization of C. elegans Locomotory Behavior
                                      
                                            Moy, Kyle,                              Li, Weiyu,                              Tran, Huu Phuoc,                              Simonis, Valerie,                              Story, Evan,                              Brandon, Christopher,                              Furst, Jacob,                              Raicu, Daniela,                              Kim, Hongkyun                              
Published in PloS one (29.12.2015)
                   
      
      
                                                  Published in PloS one (29.12.2015)
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          i-PI: A Python interface for ab initio path integral molecular dynamics simulations
                                      
                                            Ceriotti, Michele,                              More, Joshua,                              Manolopoulos, David E.                              
Published in Computer physics communications (01.03.2014)
                   
      
      
                                                  Published in Computer physics communications (01.03.2014)
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