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    ISMRM Raw data format: A proposed standard for MRI raw datasets
                                      
                                            Inati, Souheil J.,                              Naegele, Joseph D.,                              Zwart, Nicholas R.,                              Roopchansingh, Vinai,                              Lizak, Martin J.,                              Hansen, David C.,                              Liu, Chia‐Ying,                              Atkinson, David,                              Kellman, Peter,                              Kozerke, Sebastian,                              Xue, Hui,                              Campbell‐Washburn, Adrienne E.,                              Sørensen, Thomas S.,                              Hansen, Michael S.                              
Published in Magnetic resonance in medicine (01.01.2017)
                   
      
      
                                                  Published in Magnetic resonance in medicine (01.01.2017)
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          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          Semi‐blind‐trace algorithm for self‐supervised attenuation of trace‐wise coherent noise
                                      
                                            Abedi, Mohammad Mahdi,                              Pardo, David,                              Alkhalifah, Tariq                              
Published in Geophysical Prospecting (01.03.2024)
                   
      
      
                                                  Published in Geophysical Prospecting (01.03.2024)
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          Inferring copy number and genotype in tumour exome data
                                      
                                            Amarasinghe, Kaushalya C,                              Li, Jason,                              Hunter, Sally M,                              Ryland, Georgina L,                              Cowin, Prue A,                              Campbell, Ian G,                              Halgamuge, Saman K                              
Published in BMC genomics (28.08.2014)
                   
      
      
                                                  Published in BMC genomics (28.08.2014)
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          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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          Image processing for electron microscopy single-particle analysis using XMIPP
                                      
                                            Scheres, Sjors H W,                              Núñez-Ramírez, Rafael,                              Sorzano, Carlos O S,                              Carazo, José María,                              Marabini, Roberto                              
Published in Nature protocols (01.06.2008)
                   
      
      
                                                  Published in Nature protocols (01.06.2008)
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          Replacing non-biomedical concepts improves embedding of biomedical concepts
                                      
                                            Niyonkuru, Enock,                              Gomez, Mauricio Soto,                              Casarighi, Elena,                              Antogiovanni, Stephan,                              Blau, Hannah,                              Reese, Justin T.,                              Valentini, Giorgio,                              Robinson, Peter N.                              
Published in PloS one (05.05.2025)
                   
      
      
                                                  Published in PloS one (05.05.2025)
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          Bioinformatic pipelines in Python with Leaf
                                      
                                            Napolitano, Francesco,                              Mariani-Costantini, Renato,                              Tagliaferri, Roberto                              
Published in BMC bioinformatics (21.06.2013)
                   
      
      
                                                  Published in BMC bioinformatics (21.06.2013)
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          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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          PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
                                      
                                            Georgi, Benjamin,                              Costa, Ivan Gesteira,                              Schliep, Alexander                              
Published in BMC bioinformatics (06.01.2010)
                   
      
      
                                                  Published in BMC bioinformatics (06.01.2010)
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          Hidden Markov modeling for maximum probability neuron reconstruction
                                      
                                            Athey, Thomas L.,                              Tward, Daniel J.,                              Mueller, Ulrich,                              Vogelstein, Joshua T.,                              Miller, Michael I.                              
Published in Communications biology (25.04.2022)
                   
      
      
                                                  Published in Communications biology (25.04.2022)
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          Performance improvement of dynamic PV array under partial shade conditions using M 2 algorithm
                                      
                                            Manjunath, Matam,                              Venugopal Reddy, Barry,                              Lehman, Brad                              
Published in IET renewable power generation (10.06.2019)
                   
      
      
                                                  Published in IET renewable power generation (10.06.2019)
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