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    ISMRM Raw data format: A proposed standard for MRI raw datasets
                                      
                                            Inati, Souheil J.,                              Naegele, Joseph D.,                              Zwart, Nicholas R.,                              Roopchansingh, Vinai,                              Lizak, Martin J.,                              Hansen, David C.,                              Liu, Chia‐Ying,                              Atkinson, David,                              Kellman, Peter,                              Kozerke, Sebastian,                              Xue, Hui,                              Campbell‐Washburn, Adrienne E.,                              Sørensen, Thomas S.,                              Hansen, Michael S.                              
Published in Magnetic resonance in medicine (01.01.2017)
                   
      
      
                                                  Published in Magnetic resonance in medicine (01.01.2017)
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          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          Semi‐blind‐trace algorithm for self‐supervised attenuation of trace‐wise coherent noise
                                      
                                            Abedi, Mohammad Mahdi,                              Pardo, David,                              Alkhalifah, Tariq                              
Published in Geophysical Prospecting (01.03.2024)
                   
      
      
                                                  Published in Geophysical Prospecting (01.03.2024)
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          Inferring copy number and genotype in tumour exome data
                                      
                                            Amarasinghe, Kaushalya C,                              Li, Jason,                              Hunter, Sally M,                              Ryland, Georgina L,                              Cowin, Prue A,                              Campbell, Ian G,                              Halgamuge, Saman K                              
Published in BMC genomics (28.08.2014)
                   
      
      
                                                  Published in BMC genomics (28.08.2014)
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          Image processing for electron microscopy single-particle analysis using XMIPP
                                      
                                            Scheres, Sjors H W,                              Núñez-Ramírez, Rafael,                              Sorzano, Carlos O S,                              Carazo, José María,                              Marabini, Roberto                              
Published in Nature protocols (01.06.2008)
                   
      
      
                                                  Published in Nature protocols (01.06.2008)
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          Replacing non-biomedical concepts improves embedding of biomedical concepts
                                      
                                            Niyonkuru, Enock,                              Gomez, Mauricio Soto,                              Casarighi, Elena,                              Antogiovanni, Stephan,                              Blau, Hannah,                              Reese, Justin T.,                              Valentini, Giorgio,                              Robinson, Peter N.                              
Published in PloS one (05.05.2025)
                   
      
      
                                                  Published in PloS one (05.05.2025)
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          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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          Hidden Markov modeling for maximum probability neuron reconstruction
                                      
                                            Athey, Thomas L.,                              Tward, Daniel J.,                              Mueller, Ulrich,                              Vogelstein, Joshua T.,                              Miller, Michael I.                              
Published in Communications biology (25.04.2022)
                   
      
      
                                                  Published in Communications biology (25.04.2022)
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          MagPySV: A Python Package for Processing and Denoising Geomagnetic Observatory Data
                                      
                                            Cox, G. A.,                              Brown, W. J.,                              Billingham, L.,                              Holme, R.                              
Published in Geochemistry, geophysics, geosystems : G3 (01.09.2018)
                   
      
      
                                                  Published in Geochemistry, geophysics, geosystems : G3 (01.09.2018)
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          Democratic Population Decisions Result in Robust Policy-Gradient Learning: A Parametric Study with GPU Simulations
                                      
                                            Richmond, Paul,                              Buesing, Lars,                              Giugliano, Michele,                              Vasilaki, Eleni                              
Published in PloS one (04.05.2011)
                   
      
      
                                                  Published in PloS one (04.05.2011)
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          Toward a unified framework for interpreting machine-learning models in neuroimaging
                                      
                                            Kohoutová, Lada,                              Heo, Juyeon,                              Cha, Sungmin,                              Lee, Sungwoo,                              Moon, Taesup,                              Wager, Tor D.,                              Woo, Choong-Wan                              
Published in Nature protocols (01.04.2020)
                   
      
      
                                                  Published in Nature protocols (01.04.2020)
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          Simulated annealing aided genetic algorithm for gene selection from microarray data
                                      
                                            Marjit, Shyam,                              Bhattacharyya, Trinav,                              Chatterjee, Bitanu,                              Sarkar, Ram                              
Published in Computers in biology and medicine (01.05.2023)
                   
      
      
                                                  Published in Computers in biology and medicine (01.05.2023)
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