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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

by Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)

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Sb 2 S 3 -Based Dynamically Tuned Color Filter Array via Genetic Algorithm

by Wei, Xueling, Nong, Jie, Zhang, Yiyi, Ma, Hansi, Huang, Rixing, Yuan, Zhenkun, Zhang, Zhenfu, Zhang, Zhenrong, Yang, Junbo
Published in Nanomaterials (Basel, Switzerland) (24.04.2023)

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Sb[sub.2]S[sub.3]-Based Dynamically Tuned Color Filter Array via Genetic Algorithm

by Wei, Xueling, Nong, Jie, Zhang, Yiyi, Ma, Hansi, Huang, Rixing, Yuan, Zhenkun, Zhang, Zhenfu, Zhang, Zhenrong, Yang, Junbo
Published in Nanomaterials (Basel, Switzerland) (01.04.2023)

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PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data

by Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)

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Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN

by Kinman, Laurel F., Powell, Barrett M., Zhong, Ellen D., Berger, Bonnie, Davis, Joseph H.
Published in Nature protocols (01.02.2023)

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Python for chemistry : an introduction to python algorithms, simulations, and programing for chemistry

by Kanagasabapathy, M.
Year of Publication 2023

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Toward a unified framework for interpreting machine-learning models in neuroimaging

by Kohoutová, Lada, Heo, Juyeon, Cha, Sungmin, Lee, Sungwoo, Moon, Taesup, Wager, Tor D., Woo, Choong-Wan
Published in Nature protocols (01.04.2020)

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Design of Heuristic Algorithms for Hard Optimization: With Python Codes for the Travelling Salesman Problem

by Taillard, Eric D
Year of Publication 2023

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eBook Publication

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ITEP: An integrated toolkit for exploration of microbial pan-genomes

by Benedict, Matthew N, Henriksen, James R, Metcalf, William W, Whitaker, Rachel J, Price, Nathan D
Published in BMC genomics (03.01.2014)

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QFlow lite dataset: A machine-learning approach to the charge states in quantum dot experiments

by Zwolak, Justyna P., Kalantre, Sandesh S., Wu, Xingyao, Ragole, Stephen, Taylor, Jacob M.
Published in PloS one (17.10.2018)

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A New Positioning Algorithm for Position-Sensitive Avalanche Photodiodes

by Zhang, Jin, Olcott, Peter D., Levin, Craig S.
Published in IEEE transactions on nuclear science (01.06.2007)

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PyImageJ: A library for integrating ImageJ and Python

by Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)

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Differentiation of Bone Metastasis in Elderly Patients With Lung Adenocarcinoma Using Multiple Machine Learning Algorithms

by Zhou, Cheng-Mao, Wang, Ying, Xue, Qiong, Zhu, Yu
Published in Cancer control (01.01.2023)

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MEG and EEG data analysis with MNE-Python

by Gramfort, Alexandre
Published in Frontiers in neuroscience (26.12.2013)

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Optimization of water distribution network by genetic algorithm with EPANET-Python Toolkit: ptimization of water distribution network

by Pavansimha, M N, Yusuf Javeed
Published in Journal of earth system science (06.10.2025)

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Python tools for structural tasks in chemistry

by Ryzhkov, Fedor V., Ryzhkova, Yuliya E., Elinson, Michail N.
Published in Molecular diversity (01.08.2025)

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Nmrglue: an open source Python package for the analysis of multidimensional NMR data

by Helmus, Jonathan J., Jaroniec, Christopher P.
Published in Journal of biomolecular NMR (01.04.2013)

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A Diboronic Acid-Based Fluorescent Sensor Array for Rapid Identification of Lonicerae Japonicae Flos and Lonicerae Flos

by Bian, Ying, Xiang, Chenqing, Xu, Yi, Zhu, Rongping, Qin, Shuanglin, Zhang, Zhijun
Published in Molecules (14.09.2024)

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Radiation Pattern Synthesis Using Constraint Convex Optimization Algorithm for Conformal Antenna Array

by Khan, Taimur Ahmed, Khattak, Muhammad Irfan, Basit, Abdul, AlQahtani, Salman A., Alawwad, Abdulaziz M., Alotaibi, Abdullilah A.
Published in Applied sciences (01.11.2023)

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Towards understanding bugs in Python interpreters

by Liu, Di, Feng, Yang, Yan, Yanyan, Xu, Baowen
Published in Empirical software engineering : an international journal (01.01.2023)

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