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    GraphPyRec: A novel graph-based approach for fine-grained Python code recommendation
                                      
                                            Zong, Xing,                              Zheng, Shang,                              Zou, Haitao,                              Yu, Hualong,                              Gao, Shang                              
Published in Science of computer programming (01.12.2024)
                   
      
      
                                                  Published in Science of computer programming (01.12.2024)
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              Journal Article
          
              
          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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              Journal Article
          
              
          Conflict-aware Inference of Python Compatible Runtime Environments with Domain Knowledge Graph
                                      
                                            Cheng, Wei,                              Zhu, Xiangrong,                              Hu, Wei                              
Published in 2022 IEEE/ACM 44th International Conference on Software Engineering (ICSE) (01.05.2022)
                   
      
      
                                                  Published in 2022 IEEE/ACM 44th International Conference on Software Engineering (ICSE) (01.05.2022)
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              Conference Proceeding
          
              
          Reaction Mechanism Generator: Automatic construction of chemical kinetic mechanisms
                                      
                                            Gao, Connie W.,                              Allen, Joshua W.,                              Green, William H.,                              West, Richard H.                              
Published in Computer physics communications (01.06.2016)
                   
      
      
                                                  Published in Computer physics communications (01.06.2016)
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              Journal Article
          
              
          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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              Journal Article