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MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
MetaLAFFA: a flexible, end-to-end, distributed computing-compatible metagenomic functional annotation pipeline
Eng, Alexander, Verster, Adrian J., Borenstein, Elhanan
Published in BMC bioinformatics (21.10.2020)
Published in BMC bioinformatics (21.10.2020)
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Journal Article
New Python-based methods for data processing
Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
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Journal Article
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Lachance, Jean-Christophe, Lloyd, Colton J., Monk, Jonathan M., Yang, Laurence, Sastry, Anand V., Seif, Yara, Palsson, Bernhard O., Rodrigue, Sébastien, Feist, Adam M., King, Zachary A., Jacques, Pierre-Étienne
Published in PLoS computational biology (01.04.2019)
Published in PLoS computational biology (01.04.2019)
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Journal Article
PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)
Published in PloS one (06.08.2025)
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Journal Article
GenProgJS: A Baseline System for Test-Based Automated Repair of JavaScript Programs
Csuvik, Viktor, Horvath, Daniel, Lajko, Mark, Vidacs, Laszlo
Published in IEEE transactions on software engineering (01.02.2025)
Published in IEEE transactions on software engineering (01.02.2025)
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Journal Article
Efficiently accelerated bioimage analysis with NanoPyx, a Liquid Engine-powered Python framework
Saraiva, Bruno M., Cunha, Inês, Brito, António D., Follain, Gautier, Portela, Raquel, Haase, Robert, Pereira, Pedro M., Jacquemet, Guillaume, Henriques, Ricardo
Published in Nature methods (01.02.2025)
Published in Nature methods (01.02.2025)
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Journal Article
gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Journal Article
An empirical study of automated unit test generation for Python
Lukasczyk, Stephan, Kroiß, Florian, Fraser, Gordon
Published in Empirical software engineering : an international journal (01.03.2023)
Published in Empirical software engineering : an international journal (01.03.2023)
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Journal Article
PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
Marrama, Daniel, Chronister, William D., Westernberg, Luise, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Sette, Alessandro, Nielsen, Morten, Greenbaum, Jason A., Peters, Bjoern
Published in BMC bioinformatics (18.12.2023)
Published in BMC bioinformatics (18.12.2023)
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Journal Article