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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Image processing for electron microscopy single-particle analysis using XMIPP
Scheres, Sjors H W, Núñez-Ramírez, Rafael, Sorzano, Carlos O S, Carazo, José María, Marabini, Roberto
Published in Nature protocols (01.06.2008)
Published in Nature protocols (01.06.2008)
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Journal Article
Stellar oscillation optimizer: a nature-inspired metaheuristic optimization algorithm
Rodan, Ali, Al-Tamimi, Abdel-Karimi, Al-Alnemer, Loai, Mirjalili, Seyedali
Published in Cluster computing (01.10.2025)
Published in Cluster computing (01.10.2025)
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Journal Article
Research and Application of Software Reuse Identification Method Based on Code Similarity Analysis
Ding, Zongjie, Li, Hao, Zheng, Min, Han, Yu, Ma, Dingkun
Published in 2024 4th International Conference on Electronic Information Engineering and Computer Communication (EIECC) (27.12.2024)
Published in 2024 4th International Conference on Electronic Information Engineering and Computer Communication (EIECC) (27.12.2024)
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Conference Proceeding
Toward a unified framework for interpreting machine-learning models in neuroimaging
Kohoutová, Lada, Heo, Juyeon, Cha, Sungmin, Lee, Sungwoo, Moon, Taesup, Wager, Tor D., Woo, Choong-Wan
Published in Nature protocols (01.04.2020)
Published in Nature protocols (01.04.2020)
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Journal Article
Simulated annealing aided genetic algorithm for gene selection from microarray data
Marjit, Shyam, Bhattacharyya, Trinav, Chatterjee, Bitanu, Sarkar, Ram
Published in Computers in biology and medicine (01.05.2023)
Published in Computers in biology and medicine (01.05.2023)
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Journal Article
ORIGIN: Blind detection of faint emission line galaxies in MUSE datacubes
Mary, David, Bacon, Roland, Conseil, Simon, Piqueras, Laure, Schutz, Antony
Published in Astronomy and astrophysics (Berlin) (01.03.2020)
Published in Astronomy and astrophysics (Berlin) (01.03.2020)
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Journal Article
Portable BLAST-like algorithm library and its implementations for command line, Python, and R
Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)
Published in PloS one (30.11.2023)
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Journal Article
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
PyImageJ: A library for integrating ImageJ and Python
Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Journal Article