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    Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples
                                      
                                            Gyorffy, Balazs,                              Molnar, Bela,                              Lage, Hermann,                              Szallasi, Zoltan,                              Eklund, Aron C.                              
Published in PloS one (21.05.2009)
                   
      
      
                                                  Published in PloS one (21.05.2009)
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          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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          An Introduction to Programming for Bioscientists: A Python-Based Primer
                                      
                                            Ekmekci, Berk,                              McAnany, Charles E.,                              Mura, Cameron                              
Published in PLoS computational biology (01.06.2016)
                   
      
      
                                                  Published in PLoS computational biology (01.06.2016)
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          Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets
                                      
                                            Xu, Xiao,                              Zhang, Yuanhao,                              Williams, Jennie,                              Antoniou, Eric,                              McCombie, W Richard,                              Wu, Song,                              Zhu, Wei,                              Davidson, Nicholas O,                              Denoya, Paula,                              Li, Ellen                              
Published in BMC bioinformatics (28.06.2013)
                   
      
      
                                                  Published in BMC bioinformatics (28.06.2013)
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          Pangenomic genotyping with the marker array
                                      
                                            Mun, Taher,                              Vaddadi, Naga Sai Kavya,                              Langmead, Ben                              
Published in Algorithms for molecular biology (05.05.2023)
                   
      
      
                                                  Published in Algorithms for molecular biology (05.05.2023)
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          Machine learning overcomes human bias in the discovery of self-assembling peptides
                                      
                                            Batra, Rohit,                              Loeffler, Troy D.,                              Chan, Henry,                              Srinivasan, Srilok,                              Cui, Honggang,                              Korendovych, Ivan V.,                              Nanda, Vikas,                              Palmer, Liam C.,                              Solomon, Lee A.,                              Fry, H. Christopher,                              Sankaranarayanan, Subramanian K. R. S.                              
Published in Nature chemistry (01.12.2022)
                   
      
      
                                                  Published in Nature chemistry (01.12.2022)
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          Regulatory landscape enrichment analysis (RLEA): a computational toolkit for non-coding variant enrichment and cell type prioritization
                                      
                                            Rosean, Samuel,                              Sosa, Eric A.,                              O’Shea, Dónal,                              Raj, Srilakshmi M.,                              Seoighe, Cathal,                              Greally, John M.                              
Published in BMC bioinformatics (07.05.2024)
                   
      
      
                                                  Published in BMC bioinformatics (07.05.2024)
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          Integration of microarray data and literature mining identifies a sex bias in DPP4+CD4+ T cells in HIV-1 infection
                                      
                                            Stubbe, Hans Christian,                              Dahlke, Christine,                              Rotheneder, Katharina,                              Stirner, Renate,                              Roider, Julia,                              Conca, Raffaele,                              Seybold, Ulrich,                              Bogner, Johannes,                              Addo, Marylyn Martina,                              Draenert, Rika                              
Published in PloS one (18.09.2020)
                   
      
      
                                                  Published in PloS one (18.09.2020)
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          Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison
                                      
                                            Kuijpers, Lucas,                              Hornung, Bastian,                              van den Hout - van Vroonhoven, Mirjam C. G. N.,                              van IJcken, Wilfred F. J.,                              Grosveld, Frank,                              Mulugeta, Eskeatnaf                              
Published in BMC genomics (12.04.2024)
                   
      
      
                                                  Published in BMC genomics (12.04.2024)
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          MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts
                                      
                                            Hita, Andrea,                              Brocart, Gilles,                              Fernandez, Ana,                              Rehmsmeier, Marc,                              Alemany, Anna,                              Schvartzman, Sol                              
Published in BMC bioinformatics (14.01.2022)
                   
      
      
                                                  Published in BMC bioinformatics (14.01.2022)
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          Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias
                                      
                                            Didion, John P,                              Yang, Hyuna,                              Sheppard, Keith,                              Fu, Chen-Ping,                              McMillan, Leonard,                              de Villena, Fernando Pardo-Manuel,                              Churchill, Gary A                              
Published in BMC genomics (19.01.2012)
                   
      
      
                                                  Published in BMC genomics (19.01.2012)
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          Non-circular signals for nested array: sum–difference co-array and direction of arrival estimation algorithm
                                      
                                            Yunfei, Wang,                              Jinqing, Shen,                              Xiaofei, Zhang,                              Yi, He,                              Xiangrui, Dai                              
Published in IET radar, sonar & navigation (01.01.2020)
                   
      
      
                                                  Published in IET radar, sonar & navigation (01.01.2020)
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          How to explore chemical space using algorithms and automation
                                      
                                            Gromski, Piotr S.,                              Henson, Alon B.,                              Granda, Jarosław M.,                              Cronin, Leroy                              
Published in Nature reviews. Chemistry (01.02.2019)
                   
      
      
                                                  Published in Nature reviews. Chemistry (01.02.2019)
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          Revised time estimation of the ancestral human chromosome 2 fusion
                                      
                                            Poszewiecka, Barbara,                              Gogolewski, Krzysztof,                              Stankiewicz, Paweł,                              Gambin, Anna                              
Published in BMC genomics (25.08.2022)
                   
      
      
                                                  Published in BMC genomics (25.08.2022)
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          Comprehensive high-throughput arrays for relative methylation (CHARM)
                                      
                                            Irizarry, Rafael A.,                              Ladd-Acosta, Christine,                              Carvalho, Benilton,                              Wu, Hao,                              Brandenburg, Sheri A.,                              Jeddeloh, Jeffrey A.,                              Wen, Bo,                              Feinberg, Andrew P.                              
Published in Genome Research (01.05.2008)
                   
      
      
                                                  Published in Genome Research (01.05.2008)
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          Characterizing dye bias in microarray experiments
                                      
                                            Dobbin, K. K.,                              Kawasaki, E. S.,                              Petersen, D. W.,                              Simon, R. M.                              
Published in Bioinformatics (15.05.2005)
                   
      
      
                                                  Published in Bioinformatics (15.05.2005)
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