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    Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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          A Python extension for the massively parallel multiphysics simulation framework waLBerla
                                      
                                            Bauer, Martin,                              Schornbaum, Florian,                              Godenschwager, Christian,                              Markl, Matthias,                              Anderl, Daniela,                              Köstler, Harald,                              Rüde, Ulrich                              
Published in International journal of parallel, emergent and distributed systems (01.11.2016)
                   
      
      
                                                  Published in International journal of parallel, emergent and distributed systems (01.11.2016)
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          Image processing for electron microscopy single-particle analysis using XMIPP
                                      
                                            Scheres, Sjors H W,                              Núñez-Ramírez, Rafael,                              Sorzano, Carlos O S,                              Carazo, José María,                              Marabini, Roberto                              
Published in Nature protocols (01.06.2008)
                   
      
      
                                                  Published in Nature protocols (01.06.2008)
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          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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          Bioinformatic pipelines in Python with Leaf
                                      
                                            Napolitano, Francesco,                              Mariani-Costantini, Renato,                              Tagliaferri, Roberto                              
Published in BMC bioinformatics (21.06.2013)
                   
      
      
                                                  Published in BMC bioinformatics (21.06.2013)
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          PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
                                      
                                            Georgi, Benjamin,                              Costa, Ivan Gesteira,                              Schliep, Alexander                              
Published in BMC bioinformatics (06.01.2010)
                   
      
      
                                                  Published in BMC bioinformatics (06.01.2010)
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          The BubbleTree toolset: CFD-integrated algorithm for Lagrangian tracking and rigorous statistical analysis of bubble motion and gas fluxes for application to 3D fluidized bed simulations
                                      
                                            Buchheit, K.,                              Altantzis, C.,                              Bakshi, A.,                              Jordan, T.,                              Van Essendelft, D.                              
Published in Powder technology (01.10.2018)
                   
      
      
                                                  Published in Powder technology (01.10.2018)
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          Performance improvement of dynamic PV array under partial shade conditions using M 2 algorithm
                                      
                                            Manjunath, Matam,                              Venugopal Reddy, Barry,                              Lehman, Brad                              
Published in IET renewable power generation (10.06.2019)
                   
      
      
                                                  Published in IET renewable power generation (10.06.2019)
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