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SciPy 1.0: fundamental algorithms for scientific computing in Python

by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)

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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python

by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)

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Biotite: a unifying open source computational biology framework in Python

by Kunzmann, Patrick, Hamacher, Kay
Published in BMC bioinformatics (01.10.2018)

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Nmrglue: an open source Python package for the analysis of multidimensional NMR data

by Helmus, Jonathan J., Jaroniec, Christopher P.
Published in Journal of biomolecular NMR (01.04.2013)

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

by Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)

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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

by Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)

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Python workflow for the selection and identification of marker peptides—proof-of-principle study with heated milk

by Kuhnen, Gesine, Class, Lisa-Carina, Badekow, Svenja, Hanisch, Kim Lara, Rohn, Sascha, Kuballa, Jürgen
Published in Analytical and bioanalytical chemistry (01.06.2024)

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A natural language processing algorithm accurately classifies steatotic liver disease pathology to estimate the risk of cirrhosis

by Sherman, Marc S., Challa, Prasanna K., Przybyszewski, Eric M., Wilechansky, Robert M., Uche-Anya, Eugenia N., Ott, Ashley T., McGoldrick, Jessica, Goessling, Wolfram, Khalili, Hamed, Simon, Tracey G.
Published in Hepatology communications (01.04.2024)

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Machine learning algorithms predict breast cancer incidence risk: a data-driven retrospective study based on biochemical biomarkers

by Guo, Qianqian, Wu, Peng, He, Junhao, Zhang, Ge, Zhou, Wu, Chen, Qianjun
Published in BMC cancer (01.07.2025)

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SAB: An open-access Python-based integrated platform for fully automated emergent sustainability assessment of biorefineries

by Zarafshani, Hanie, Watjanatepin, Ponnapat, Navare, Kranti, Sauve, Giovanna, Van Acker, Karel
Published in The international journal of life cycle assessment (01.04.2024)

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Shooting the Numerical Solution of Moisture Flow Equation with Root Water Uptake Models: A Python Tool

by Difonzo, Fabio V., Masciopinto, Costantino, Vurro, Michele, Berardi, Marco
Published in Water resources management (01.06.2021)

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Comparative Analysis of AI Models for Python Code Generation: A HumanEval Benchmark Study

by Bayram, Ali, Menekse Dalveren, Gonca Gokce, Derawi, Mohammad
Published in Applied sciences (10.09.2025)

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Machine Learning with PySpark - With Natural Language Processing and Recommender Systems (2nd Edition)

by Singh, Pramod
Year of Publication 2021

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eBook

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Practical Explainable AI Using Python - Artificial Intelligence Model Explanations Using Python-Based Libraries, Extensions, and Frameworks

by Mishra, Pradeepta
Year of Publication 2022

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eBook Book

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Machine learning modeling of base flow generation potential: A case study of the combined application of BWM and Fallback bargaining algorithm

by Nasiri Khiavi, Ali
Published in Journal of hydrology (Amsterdam) (01.06.2024)

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Python based location analysis of wind mills in urban environment

by Hossain, Mohammad Rafayet
Published in GeoJournal (01.06.2021)

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PODPAC: open-source Python software for enabling harmonized, plug-and-play processing of disparate earth observation data sets and seamless transition onto the serverless cloud by earth scientists

by Ueckermann, Mattheus P., Bieszczad, Jerry, Entekhabi, Dara, Shapiro, Marc L., Callendar, David R., Sullivan, David, Milloy, Jeffrey
Published in Earth science informatics (01.12.2020)

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Using algorithmic game theory to improve supervised machine learning: A novel applicability approach in flood susceptibility mapping

by Nasiri Khiavi, Ali, Vafakhah, Mehdi
Published in Environmental science and pollution research international (01.08.2024)

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Combining Deep Neural Network with Genetic Algorithm for Axial Flow Fan Design and Development

by Liu, Yu-Ling, Nisa, Elsa Chaerun, Kuan, Yean-Der, Luo, Win-Jet, Feng, Chien-Chung
Published in Processes (01.01.2023)

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