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    PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
                                      
                                            Marrama, Daniel,                              Chronister, William D.,                              Westernberg, Luise,                              Vita, Randi,                              Koşaloğlu-Yalçın, Zeynep,                              Sette, Alessandro,                              Nielsen, Morten,                              Greenbaum, Jason A.,                              Peters, Bjoern                              
Published in BMC bioinformatics (18.12.2023)
                   
      
      
                                                  Published in BMC bioinformatics (18.12.2023)
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              Journal Article
          
              
          Prediction of Blast-Induced Structural Response and Associated Damage Using Machine Learning
                                      
                                            Abd-Elhamed, Ayman,                              Alkhatib, Soliman,                              Abdelfattah, Ahmed M. H.                              
Published in Buildings (Basel) (01.12.2022)
                   
      
      
                                                  Published in Buildings (Basel) (01.12.2022)
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          The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
                                      
                                            Huang, Da Wei,                              Sherman, Brad T,                              Tan, Qina,                              Collins, Jack R,                              Alvord, W Gregory,                              Roayaei, Jean,                              Stephens, Robert,                              Baseler, Michael W,                              Lane, H Clifford,                              Lempicki, Richard A                              
Published in Genome biology (04.09.2007)
                   
      
      
                                                  Published in Genome biology (04.09.2007)
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          DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
                                      
                                            Huang, Da Wei,                              Sherman, Brad T,                              Tan, Qina,                              Kir, Joseph,                              Liu, David,                              Bryant, David,                              Guo, Yongjian,                              Stephens, Robert,                              Baseler, Michael W,                              Lane, H. Clifford,                              Lempicki, Richard A                              
Published in Nucleic acids research (01.07.2007)
                   
      
      
                                                  Published in Nucleic acids research (01.07.2007)
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              Journal Article
          
              
          FuzzyID2: A software package for large data set species identification via barcoding and metabarcoding using hidden Markov models and fuzzy set methods
                                      
                                            Shi, Zhi‐yong,                              Yang, Cai‐qing,                              Hao, Meng‐di,                              Wang, Xiao‐yang,                              Ward, Robert D.,                              Zhang, Ai‐bing                              
Published in Molecular ecology resources (01.05.2018)
                   
      
      
                                                  Published in Molecular ecology resources (01.05.2018)
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          One-pass list-mode EM algorithm for high-resolution 3-D PET image reconstruction into large arrays
                                      
                                            Reader, A.J.,                              Ally, S.,                              Bakatselos, F.,                              Manavaki, R.,                              Walledge, R.J.,                              Jeavons, A.P.,                              Julyan, P.J.,                              Sha Zhao,                              Hastings, D.L.,                              Zweit, J.                              
Published in IEEE transactions on nuclear science (01.06.2002)
                   
      
      
                                                  Published in IEEE transactions on nuclear science (01.06.2002)
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          The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
                                      
                                            Shi, Leming,                              Jones, Wendell D,                              Jensen, Roderick V,                              Harris, Stephen C,                              Perkins, Roger G,                              Goodsaid, Federico M,                              Guo, Lei,                              Croner, Lisa J,                              Boysen, Cecilie,                              Fang, Hong,                              Qian, Feng,                              Amur, Shashi,                              Bao, Wenjun,                              Barbacioru, Catalin C,                              Bertholet, Vincent,                              Cao, Xiaoxi Megan,                              Chu, Tzu-Ming,                              Collins, Patrick J,                              Fan, Xiao-hui,                              Frueh, Felix W,                              Fuscoe, James C,                              Guo, Xu,                              Han, Jing,                              Herman, Damir,                              Hong, Huixiao,                              Kawasaki, Ernest S,                              Li, Quan-Zhen,                              Luo, Yuling,                              Ma, Yunqing,                              Mei, Nan,                              Peterson, Ron L,                              Puri, Raj K,                              Shippy, Richard,                              Su, Zhenqiang,                              Sun, Yongming Andrew,                              Sun, Hongmei,                              Thorn, Brett,                              Turpaz, Yaron,                              Wang, Charles,                              Wang, Sue Jane,                              Warrington, Janet A,                              Willey, James C,                              Wu, Jie,                              Xie, Qian,                              Zhang, Liang,                              Zhang, Lu,                              Zhong, Sheng,                              Wolfinger, Russell D,                              Tong, Weida                              
Published in BMC bioinformatics (12.08.2008)
                   
      
      
                                                  Published in BMC bioinformatics (12.08.2008)
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          Online List Labeling: Breaking the log2n Barrier
                                      
                                            Bender, Michael A.,                              Conway, Alex,                              Farach-Colton, Martin,                              Komlos, Hanna,                              Kuszmaul, William,                              Wein, Nicole                              
Published in Proceedings / annual Symposium on Foundations of Computer Science (01.10.2022)
                   
      
      
                                                  Published in Proceedings / annual Symposium on Foundations of Computer Science (01.10.2022)
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          g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments
                                      
                                            Reimand, Jüri,                              Kull, Meelis,                              Peterson, Hedi,                              Hansen, Jaanus,                              Vilo, Jaak                              
Published in Nucleic acids research (01.07.2007)
                   
      
      
                                                  Published in Nucleic acids research (01.07.2007)
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          Nearly Optimal List Labeling
                                      
                                            Bender, Michael A.,                              Conway, Alex,                              Farach-Colton, Martin,                              Komlos, Hanna,                              Koucky, Michal,                              Kuszmaul, William,                              Saks, Michael                              
Published in Proceedings / annual Symposium on Foundations of Computer Science (27.10.2024)
                   
      
      
                                                  Published in Proceedings / annual Symposium on Foundations of Computer Science (27.10.2024)
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              Conference Proceeding
          
              
          The effective skyline quantify-utility patterns mining algorithm with pruning strategies
                                      
                                            Wu, Jimmy,                              Li, Ranran,                              Hsu, Pi-Chung,                              Wu, Mu-En                              
Published in Computer Science and Information Systems (01.06.2023)
                   
      
      
                                                  Published in Computer Science and Information Systems (01.06.2023)
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          Formally Verified Suffix Array Construction: Formally Verified Suffix Array Construction
                                      
                                            Cheung, Louis,                              Moffat, Alistair,                              Rizkallah, Christine                              
Published in Journal of automated reasoning (01.09.2025)
                   
      
      
                                                  Published in Journal of automated reasoning (01.09.2025)
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