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    Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          MXene/WO 3 Sensor Array with Improved SNN Algorithm for Accurate Identification of Toxic Gases
                                      
                                            Guo, Liangchao,                              Wang, Junke,                              Han, Haoran,                              Wang, Peng,                              Lu, Yunxiang,                              Yuan, Qilong,                              Du, Chunyu,                              Yin, Shuo,                              Zhou, Ye,                              Zhang, Chao                              
Published in ACS applied materials & interfaces (13.11.2024)
                   
      
      
                                                  Published in ACS applied materials & interfaces (13.11.2024)
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          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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          Image processing for electron microscopy single-particle analysis using XMIPP
                                      
                                            Scheres, Sjors H W,                              Núñez-Ramírez, Rafael,                              Sorzano, Carlos O S,                              Carazo, José María,                              Marabini, Roberto                              
Published in Nature protocols (01.06.2008)
                   
      
      
                                                  Published in Nature protocols (01.06.2008)
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          Bioinformatic pipelines in Python with Leaf
                                      
                                            Napolitano, Francesco,                              Mariani-Costantini, Renato,                              Tagliaferri, Roberto                              
Published in BMC bioinformatics (21.06.2013)
                   
      
      
                                                  Published in BMC bioinformatics (21.06.2013)
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          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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          PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
                                      
                                            Georgi, Benjamin,                              Costa, Ivan Gesteira,                              Schliep, Alexander                              
Published in BMC bioinformatics (06.01.2010)
                   
      
      
                                                  Published in BMC bioinformatics (06.01.2010)
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          Using DeepLabCut for 3D markerless pose estimation across species and behaviors
                                      
                                            Nath, Tanmay,                              Mathis, Alexander,                              Chen, An Chi,                              Patel, Amir,                              Bethge, Matthias,                              Mathis, Mackenzie Weygandt                              
Published in Nature protocols (01.07.2019)
                   
      
      
                                                  Published in Nature protocols (01.07.2019)
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          Design and implementation of a multibeam filtering antenna array using compact 3 × 3 Nolen matrix aided by grey wolf algorithm
                                      
                                            Liu, Haiwen,                              Gu, Xinyi,                              Gao, Mengying,                              Song, Zeren,                              Tian, Hongliang                              
Published in International journal of electronics and communications (01.09.2024)
                   
      
      
                                                  Published in International journal of electronics and communications (01.09.2024)
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          Sb[sub.2]S[sub.3]-Based Dynamically Tuned Color Filter Array via Genetic Algorithm
                                      
                                            Wei, Xueling,                              Nong, Jie,                              Zhang, Yiyi,                              Ma, Hansi,                              Huang, Rixing,                              Yuan, Zhenkun,                              Zhang, Zhenfu,                              Zhang, Zhenrong,                              Yang, Junbo                              
Published in Nanomaterials (Basel, Switzerland) (01.04.2023)
                   
      
      
                                                  Published in Nanomaterials (Basel, Switzerland) (01.04.2023)
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          Sb 2 S 3 -Based Dynamically Tuned Color Filter Array via Genetic Algorithm
                                      
                                            Wei, Xueling,                              Nong, Jie,                              Zhang, Yiyi,                              Ma, Hansi,                              Huang, Rixing,                              Yuan, Zhenkun,                              Zhang, Zhenfu,                              Zhang, Zhenrong,                              Yang, Junbo                              
Published in Nanomaterials (Basel, Switzerland) (24.04.2023)
                   
      
      
                                                  Published in Nanomaterials (Basel, Switzerland) (24.04.2023)
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          Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN
                                      
                                            Kinman, Laurel F.,                              Powell, Barrett M.,                              Zhong, Ellen D.,                              Berger, Bonnie,                              Davis, Joseph H.                              
Published in Nature protocols (01.02.2023)
                   
      
      
                                                  Published in Nature protocols (01.02.2023)
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