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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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Biotite: a unifying open source computational biology framework in Python

by Kunzmann, Patrick, Hamacher, Kay
Published in BMC bioinformatics (01.10.2018)

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SciPy 1.0: fundamental algorithms for scientific computing in Python

by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)

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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

by Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)

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An Introduction to Programming for Bioscientists: A Python-Based Primer

by Ekmekci, Berk, McAnany, Charles E., Mura, Cameron
Published in PLoS computational biology (01.06.2016)

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Python - An Introduction to Programming (2nd Edition)

by Parker, James R
Year of Publication 2021

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Pytrf: a python package for finding tandem repeats from genomic sequences

by Du, Lianming, Sun, Dalin, Chen, Jiahao, Zhou, Xinyi, Zhao, Kelei, Zeng, Qianglin, Yang, Nan
Published in BMC bioinformatics (04.06.2025)

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

by Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)

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CosinorPy: a python package for cosinor-based rhythmometry

by Moskon, Miha
Published in BMC bioinformatics (29.10.2020)

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Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data

by ElAbd, Hesham, Degenhardt, Frauke, Koudelka, Tomas, Kamps, Ann-Kristin, Tholey, Andreas, Bacher, Petra, Lenz, Tobias L., Franke, Andre, Wendorff, Mareike
Published in BMC bioinformatics (17.08.2021)

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PODPAC: open-source Python software for enabling harmonized, plug-and-play processing of disparate earth observation data sets and seamless transition onto the serverless cloud by earth scientists

by Ueckermann, Mattheus P., Bieszczad, Jerry, Entekhabi, Dara, Shapiro, Marc L., Callendar, David R., Sullivan, David, Milloy, Jeffrey
Published in Earth science informatics (01.12.2020)

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Non-circular signals for nested array: sum–difference co-array and direction of arrival estimation algorithm

by Yunfei, Wang, Jinqing, Shen, Xiaofei, Zhang, Yi, He, Xiangrui, Dai
Published in IET radar, sonar & navigation (01.01.2020)

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Anyone Can Code: The Art and Science of Logical Creativity

by Arya, Ali
Year of Publication 2021

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eBook Book

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Data Structures and Program Design Using Python - A Self-Teaching Introduction

by Malhotra, D, Malhotra, N
Year of Publication 2021

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eBook

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Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data

by Draizen, Eli J., Readey, John, Mura, Cameron, Bourne, Philip E.
Published in BMC bioinformatics (04.01.2024)

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KABOOM! A new suffix array based algorithm for clustering expression data

by Hazelhurst, Scott, Lipták, Zsuzsanna
Published in Bioinformatics (15.12.2011)

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Noisecut: a python package for noise-tolerant classification of binary data using prior knowledge integration and max-cut solutions

by Samadi, Moein E., Mirzaieazar, Hedieh, Mitsos, Alexander, Schuppert, Andreas
Published in BMC bioinformatics (20.04.2024)

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Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS

by Vieira, Ivo Henrique Provensi, Botelho, Eduardo Buganemi, de Souza Gomes, Thales Junior, Kist, Roger, Caceres, Rafael Andrade, Zanchi, Fernando Berton
Published in BMC bioinformatics (22.03.2023)

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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support

by Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)

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Automated Image Processing Workflow for Morphological Analysis of Fluorescence Microscopy Cell Images

by Voigt, Sven P., Ravikumar, K., Basu, Bikramjit, Kalidindi, Surya R.
Published in JOM (1989) (01.08.2021)

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