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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)
Published in BMC bioinformatics (07.12.2023)
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Journal Article
An Introduction to Programming for Bioscientists: A Python-Based Primer
Ekmekci, Berk, McAnany, Charles E., Mura, Cameron
Published in PLoS computational biology (01.06.2016)
Published in PLoS computational biology (01.06.2016)
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Journal Article
Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data
ElAbd, Hesham, Degenhardt, Frauke, Koudelka, Tomas, Kamps, Ann-Kristin, Tholey, Andreas, Bacher, Petra, Lenz, Tobias L., Franke, Andre, Wendorff, Mareike
Published in BMC bioinformatics (17.08.2021)
Published in BMC bioinformatics (17.08.2021)
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Journal Article
Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS
Vieira, Ivo Henrique Provensi, Botelho, Eduardo Buganemi, de Souza Gomes, Thales Junior, Kist, Roger, Caceres, Rafael Andrade, Zanchi, Fernando Berton
Published in BMC bioinformatics (22.03.2023)
Published in BMC bioinformatics (22.03.2023)
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Journal Article
gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Journal Article
PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
Marrama, Daniel, Chronister, William D., Westernberg, Luise, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Sette, Alessandro, Nielsen, Morten, Greenbaum, Jason A., Peters, Bjoern
Published in BMC bioinformatics (18.12.2023)
Published in BMC bioinformatics (18.12.2023)
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Journal Article
Non-circular signals for nested array: sum–difference co-array and direction of arrival estimation algorithm
Yunfei, Wang, Jinqing, Shen, Xiaofei, Zhang, Yi, He, Xiangrui, Dai
Published in IET radar, sonar & navigation (01.01.2020)
Published in IET radar, sonar & navigation (01.01.2020)
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Journal Article
KF-NIPT: K-mer and fetal fraction-based estimation of chromosomal anomaly from NIPT data
Kim, Dongin, Sohn, Ji Yeon, Cho, Jin Hee, Choi, Ji-Hye, Oh, Gwi-young, Woo, Hyun Goo
Published in BMC bioinformatics (22.05.2025)
Published in BMC bioinformatics (22.05.2025)
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Journal Article
SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework
Lewinski, Martin, Bramkamp, Yannik, Köster, Tino, Staiger, Dorothee
Published in BMC bioinformatics (18.03.2020)
Published in BMC bioinformatics (18.03.2020)
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Journal Article
Value trace problems with assisting references for Python programming self-study
Hay Mar Shwe, San Hay Mar, Funabiki, Nobuo, Syaifudin, Yan Watequlis, Tar, Phyu Phyu, Kyaw, Htoo Htoo Sandi, Thant, Hnin Aye, Kao, Wen-Chung, Min, Nandar Win, Myint, Thandar, Htet, Ei Ei
Published in International journal of Web information systems (06.09.2021)
Published in International journal of Web information systems (06.09.2021)
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Journal Article
Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2
Miranda, Fábio M., Azevedo, Vasco C., Ramos, Rommel J., Renard, Bernhard Y., Piro, Vitor C.
Published in BMC bioinformatics (02.07.2024)
Published in BMC bioinformatics (02.07.2024)
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Journal Article