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    PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow
                                      
                                            Huang, Sitao,                              Wu, Kun,                              Jeong, Hyunmin,                              Wang, Chengyue,                              Chen, Deming,                              Hwu, Wen-Mei                              
Published in IEEE transactions on computers (01.12.2021)
                   
      
      
                                                  Published in IEEE transactions on computers (01.12.2021)
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          MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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          scTPC: a novel semisupervised deep clustering model for scRNA-seq data
                                      
                                            Qiu, Yushan,                              Yang, Lingfei,                              Jiang, Hao,                              Zou, Quan                              
Published in Bioinformatics (Oxford, England) (02.05.2024)
                   
      
      
                                                  Published in Bioinformatics (Oxford, England) (02.05.2024)
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          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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          pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
                                      
                                            Behdenna, Abdelkader,                              Colange, Maximilien,                              Haziza, Julien,                              Gema, Aryo,                              Appé, Guillaume,                              Azencott, Chloé-Agathe,                              Nordor, Akpéli                              
Published in BMC bioinformatics (07.12.2023)
                   
      
      
                                                  Published in BMC bioinformatics (07.12.2023)
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          Bridging Python to Silicon: The SODA Toolchain
                                      
                                            Agostini, Nicolas Bohm,                              Curzel, Serena,                              Zhang, Jeff Jun,                              Limaye, Ankur,                              Tan, Cheng,                              Amatya, Vinay,                              Minutoli, Marco,                              Castellana, Vito Giovanni,                              Manzano, Joseph,                              Brooks, David,                              Wei, Gu-Yeon,                              Tumeo, Antonino                              
Published in IEEE MICRO (01.09.2022)
                   
      
      
                                                  Published in IEEE MICRO (01.09.2022)
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          Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data
                                      
                                            ElAbd, Hesham,                              Degenhardt, Frauke,                              Koudelka, Tomas,                              Kamps, Ann-Kristin,                              Tholey, Andreas,                              Bacher, Petra,                              Lenz, Tobias L.,                              Franke, Andre,                              Wendorff, Mareike                              
Published in BMC bioinformatics (17.08.2021)
                   
      
      
                                                  Published in BMC bioinformatics (17.08.2021)
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          An Introduction to Programming for Bioscientists: A Python-Based Primer
                                      
                                            Ekmekci, Berk,                              McAnany, Charles E.,                              Mura, Cameron                              
Published in PLoS computational biology (01.06.2016)
                   
      
      
                                                  Published in PLoS computational biology (01.06.2016)
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          New Python-based methods for data processing
                                      
                                            Sauter, Nicholas K.,                              Hattne, Johan,                              Grosse-Kunstleve, Ralf W.,                              Echols, Nathaniel                              
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
                   
      
      
                                                  Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
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          Coding recognition of the dose–effect interdependence of small biomolecules encrypted on paired chromatographic-based microassay arrays: Coding recognition of the dose–effect interdependence of small biomolecules encrypted on paired chromatographic-based microassay arrays
                                      
                                            Deng, Yifeng,                              Lin, Zhenpeng,                              Cheng, Yuan                              
Published in Analytical and bioanalytical chemistry (01.08.2022)
                   
      
      
                                                  Published in Analytical and bioanalytical chemistry (01.08.2022)
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          KF-NIPT: K-mer and fetal fraction-based estimation of chromosomal anomaly from NIPT data
                                      
                                            Kim, Dongin,                              Sohn, Ji Yeon,                              Cho, Jin Hee,                              Choi, Ji-Hye,                              Oh, Gwi-young,                              Woo, Hyun Goo                              
Published in BMC bioinformatics (22.05.2025)
                   
      
      
                                                  Published in BMC bioinformatics (22.05.2025)
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          Comparative Analysis of AI Models for Python Code Generation: A HumanEval Benchmark Study
                                      
                                            Bayram, Ali,                              Menekse Dalveren, Gonca Gokce,                              Derawi, Mohammad                              
Published in Applied sciences (10.09.2025)
                   
      
      
                                                  Published in Applied sciences (10.09.2025)
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          Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS
                                      
                                            Vieira, Ivo Henrique Provensi,                              Botelho, Eduardo Buganemi,                              de Souza Gomes, Thales Junior,                              Kist, Roger,                              Caceres, Rafael Andrade,                              Zanchi, Fernando Berton                              
Published in BMC bioinformatics (22.03.2023)
                   
      
      
                                                  Published in BMC bioinformatics (22.03.2023)
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          SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework
                                      
                                            Lewinski, Martin,                              Bramkamp, Yannik,                              Köster, Tino,                              Staiger, Dorothee                              
Published in BMC bioinformatics (18.03.2020)
                   
      
      
                                                  Published in BMC bioinformatics (18.03.2020)
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