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    PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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              Journal Article
          
              
          Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison
                                      
                                            Kuijpers, Lucas,                              Hornung, Bastian,                              van den Hout - van Vroonhoven, Mirjam C. G. N.,                              van IJcken, Wilfred F. J.,                              Grosveld, Frank,                              Mulugeta, Eskeatnaf                              
Published in BMC genomics (12.04.2024)
                   
      
      
                                                  Published in BMC genomics (12.04.2024)
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              Journal Article
          
              
          Increasing tendency of urine protein is a risk factor for rapid eGFR decline in patients with CKD: A machine learning-based prediction model by using a big database
                                      
                                            Inaguma, Daijo,                              Kitagawa, Akimitsu,                              Yanagiya, Ryosuke,                              Koseki, Akira,                              Iwamori, Toshiya,                              Kudo, Michiharu,                              Yuzawa, Yukio                              
Published in PLoS ONE (17.09.2020)
                   
      
      
                                                  Published in PLoS ONE (17.09.2020)
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              Journal Article
          
              
          PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow
                                      
                                            Huang, Sitao,                              Wu, Kun,                              Jeong, Hyunmin,                              Wang, Chengyue,                              Chen, Deming,                              Hwu, Wen-Mei                              
Published in IEEE transactions on computers (01.12.2021)
                   
      
      
                                                  Published in IEEE transactions on computers (01.12.2021)
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              Journal Article
          
              
          MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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          Domain Knowledge Matters: Improving Prompts with Fix Templates for Repairing Python Type Errors
                                      
                                            Peng, Yun,                              Gao, Shuzheng,                              Gao, Cuiyun,                              Huo, Yintong,                              Lyu, Michael R.                              
Published in Proceedings / International Conference on Software Engineering (14.04.2024)
                   
      
      
                                                  Published in Proceedings / International Conference on Software Engineering (14.04.2024)
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              Conference Proceeding
          
              
          scTPC: a novel semisupervised deep clustering model for scRNA-seq data
                                      
                                            Qiu, Yushan,                              Yang, Lingfei,                              Jiang, Hao,                              Zou, Quan                              
Published in Bioinformatics (Oxford, England) (02.05.2024)
                   
      
      
                                                  Published in Bioinformatics (Oxford, England) (02.05.2024)
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          pyNBS: a Python implementation for network-based stratification of tumor mutations
                                      
                                            Huang, Justin K,                              Jia, Tongqiu,                              Carlin, Daniel E,                              Ideker, Trey                              
Published in Bioinformatics (15.08.2018)
                   
      
      
                                                  Published in Bioinformatics (15.08.2018)
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          pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
                                      
                                            Behdenna, Abdelkader,                              Colange, Maximilien,                              Haziza, Julien,                              Gema, Aryo,                              Appé, Guillaume,                              Azencott, Chloé-Agathe,                              Nordor, Akpéli                              
Published in BMC bioinformatics (07.12.2023)
                   
      
      
                                                  Published in BMC bioinformatics (07.12.2023)
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          Bridging Python to Silicon: The SODA Toolchain
                                      
                                            Agostini, Nicolas Bohm,                              Curzel, Serena,                              Zhang, Jeff Jun,                              Limaye, Ankur,                              Tan, Cheng,                              Amatya, Vinay,                              Minutoli, Marco,                              Castellana, Vito Giovanni,                              Manzano, Joseph,                              Brooks, David,                              Wei, Gu-Yeon,                              Tumeo, Antonino                              
Published in IEEE MICRO (01.09.2022)
                   
      
      
                                                  Published in IEEE MICRO (01.09.2022)
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              Journal Article
          
              
          Comparative Analysis of AI Models for Python Code Generation: A HumanEval Benchmark Study
                                      
                                            Bayram, Ali,                              Menekse Dalveren, Gonca Gokce,                              Derawi, Mohammad                              
Published in Applied sciences (10.09.2025)
                   
      
      
                                                  Published in Applied sciences (10.09.2025)
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          An Introduction to Programming for Bioscientists: A Python-Based Primer
                                      
                                            Ekmekci, Berk,                              McAnany, Charles E.,                              Mura, Cameron                              
Published in PLoS computational biology (01.06.2016)
                   
      
      
                                                  Published in PLoS computational biology (01.06.2016)
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              Journal Article