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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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Biotite: a unifying open source computational biology framework in Python

by Kunzmann, Patrick, Hamacher, Kay
Published in BMC bioinformatics (01.10.2018)

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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

by Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)

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Pytrf: a python package for finding tandem repeats from genomic sequences

by Du, Lianming, Sun, Dalin, Chen, Jiahao, Zhou, Xinyi, Zhao, Kelei, Zeng, Qianglin, Yang, Nan
Published in BMC bioinformatics (04.06.2025)

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CosinorPy: a python package for cosinor-based rhythmometry

by Moskon, Miha
Published in BMC bioinformatics (29.10.2020)

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Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data

by ElAbd, Hesham, Degenhardt, Frauke, Koudelka, Tomas, Kamps, Ann-Kristin, Tholey, Andreas, Bacher, Petra, Lenz, Tobias L., Franke, Andre, Wendorff, Mareike
Published in BMC bioinformatics (17.08.2021)

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Data Structures and Program Design Using Python - A Self-Teaching Introduction

by Malhotra, D, Malhotra, N
Year of Publication 2021

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Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data

by Draizen, Eli J., Readey, John, Mura, Cameron, Bourne, Philip E.
Published in BMC bioinformatics (04.01.2024)

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ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

by Kieser, Silas, Brown, Joseph, Zdobnov, Evgeny M., Trajkovski, Mirko, McCue, Lee Ann
Published in BMC bioinformatics (22.06.2020)

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Noisecut: a python package for noise-tolerant classification of binary data using prior knowledge integration and max-cut solutions

by Samadi, Moein E., Mirzaieazar, Hedieh, Mitsos, Alexander, Schuppert, Andreas
Published in BMC bioinformatics (20.04.2024)

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Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS

by Vieira, Ivo Henrique Provensi, Botelho, Eduardo Buganemi, de Souza Gomes, Thales Junior, Kist, Roger, Caceres, Rafael Andrade, Zanchi, Fernando Berton
Published in BMC bioinformatics (22.03.2023)

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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support

by Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)

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PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins

by Marrama, Daniel, Chronister, William D., Westernberg, Luise, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Sette, Alessandro, Nielsen, Morten, Greenbaum, Jason A., Peters, Bjoern
Published in BMC bioinformatics (18.12.2023)

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KF-NIPT: K-mer and fetal fraction-based estimation of chromosomal anomaly from NIPT data

by Kim, Dongin, Sohn, Ji Yeon, Cho, Jin Hee, Choi, Ji-Hye, Oh, Gwi-young, Woo, Hyun Goo
Published in BMC bioinformatics (22.05.2025)

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A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

by Smelter, Andrey, Astra, Morgan, Moseley, Hunter N. B.
Published in BMC bioinformatics (17.03.2017)

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SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework

by Lewinski, Martin, Bramkamp, Yannik, Köster, Tino, Staiger, Dorothee
Published in BMC bioinformatics (18.03.2020)

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An Introduction to Programming for Bioscientists: A Python-Based Primer

by Ekmekci, Berk, McAnany, Charles E., Mura, Cameron
Published in PLoS computational biology (01.06.2016)

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Python-Based Circuit Design for Fundamental Building Blocks of Spiking Neural Network

by Qin, Xing, Li, Chaojie, He, Haitao, Pan, Zejun, Lai, Chenxiao
Published in Electronics (Basel) (23.05.2023)

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Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2

by Miranda, Fábio M., Azevedo, Vasco C., Ramos, Rommel J., Renard, Bernhard Y., Piro, Vitor C.
Published in BMC bioinformatics (02.07.2024)

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altAFplotter: a web app for reliable UPD detection in NGS diagnostics

by Radtke, Maximilian, Moch, Johanna, Hentschel, Julia, Schumann, Isabell
Published in BMC bioinformatics (12.09.2024)

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