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    MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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              Journal Article
          
              
          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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              Journal Article
          
              
          New Python-based methods for data processing
                                      
                                            Sauter, Nicholas K.,                              Hattne, Johan,                              Grosse-Kunstleve, Ralf W.,                              Echols, Nathaniel                              
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
                   
      
      
                                                  Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
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              Journal Article
          
              
          gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
                                      
                                            Irrgang, M. Eric,                              Davis, Caroline,                              Kasson, Peter M.                              
Published in PLoS computational biology (01.02.2022)
                   
      
      
                                                  Published in PLoS computational biology (01.02.2022)
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              Journal Article
          
              
          PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
                                      
                                            Marrama, Daniel,                              Chronister, William D.,                              Westernberg, Luise,                              Vita, Randi,                              Koşaloğlu-Yalçın, Zeynep,                              Sette, Alessandro,                              Nielsen, Morten,                              Greenbaum, Jason A.,                              Peters, Bjoern                              
Published in BMC bioinformatics (18.12.2023)
                   
      
      
                                                  Published in BMC bioinformatics (18.12.2023)
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              Journal Article
          
              
          Bioinformatic pipelines in Python with Leaf
                                      
                                            Napolitano, Francesco,                              Mariani-Costantini, Renato,                              Tagliaferri, Roberto                              
Published in BMC bioinformatics (21.06.2013)
                   
      
      
                                                  Published in BMC bioinformatics (21.06.2013)
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              Journal Article
          
              
          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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              Journal Article
          
              
          MetaLAFFA: a flexible, end-to-end, distributed computing-compatible metagenomic functional annotation pipeline
                                      
                                            Eng, Alexander,                              Verster, Adrian J.,                              Borenstein, Elhanan                              
Published in BMC bioinformatics (21.10.2020)
                   
      
      
                                                  Published in BMC bioinformatics (21.10.2020)
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              Journal Article
          
              
          pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library
                                      
                                            Röst, Hannes L.,                              Schmitt, Uwe,                              Aebersold, Ruedi,                              Malmström, Lars                              
Published in Proteomics (Weinheim) (01.01.2014)
                   
      
      
                                                  Published in Proteomics (Weinheim) (01.01.2014)
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              Journal Article
          
              
          Domain Knowledge Matters: Improving Prompts with Fix Templates for Repairing Python Type Errors
                                      
                                            Peng, Yun,                              Gao, Shuzheng,                              Gao, Cuiyun,                              Huo, Yintong,                              Lyu, Michael R.                              
Published in Proceedings / International Conference on Software Engineering (14.04.2024)
                   
      
      
                                                  Published in Proceedings / International Conference on Software Engineering (14.04.2024)
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              Conference Proceeding
          
              
          GSEApy: a comprehensive package for performing gene set enrichment analysis in Python
                                      
                                            Fang, Zhuoqing,                              Liu, Xinyuan,                              Peltz, Gary                              
Published in Bioinformatics (Oxford, England) (01.01.2023)
                   
      
      
                                                  Published in Bioinformatics (Oxford, England) (01.01.2023)
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              Journal Article
          
              
          Performance improvement of dynamic PV array under partial shade conditions using M 2 algorithm
                                      
                                            Manjunath, Matam,                              Venugopal Reddy, Barry,                              Lehman, Brad                              
Published in IET renewable power generation (10.06.2019)
                   
      
      
                                                  Published in IET renewable power generation (10.06.2019)
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              Journal Article
          
              
          PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow
                                      
                                            Huang, Sitao,                              Wu, Kun,                              Jeong, Hyunmin,                              Wang, Chengyue,                              Chen, Deming,                              Hwu, Wen-Mei                              
Published in IEEE transactions on computers (01.12.2021)
                   
      
      
                                                  Published in IEEE transactions on computers (01.12.2021)
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              Journal Article