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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces

by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)

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PHOTONAI—A Python API for rapid machine learning model development

by Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim
Published in PloS one (21.07.2021)

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Bioinformatic pipelines in Python with Leaf

by Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)

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MEG and EEG data analysis with MNE-Python

by Gramfort, Alexandre
Published in Frontiers in neuroscience (26.12.2013)

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

by Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)

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SPOTting Model Parameters Using a Ready-Made Python Package

by Houska, Tobias, Kraft, Philipp, Chamorro-Chavez, Alejandro, Breuer, Lutz
Published in PloS one (17.12.2015)

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FalseColor-Python: A rapid intensity-leveling and digital-staining package for fluorescence-based slide-free digital pathology

by Serafin, Robert, Xie, Weisi, Glaser, Adam K., Liu, Jonathan T. C.
Published in PloS one (01.10.2020)

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Innovative UAV LiDAR Generated Point-Cloud Processing Algorithm in Python for Unsupervised Detection and Analysis of Agricultural Field-Plots

by Polák, Michal, Miřijovský, Jakub, Hernándiz, Alba E., Špíšek, Zdeněk, Koprna, Radoslav, Humplík, Jan F.
Published in Remote sensing (Basel, Switzerland) (10.08.2021)

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Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3

by Bredesen-Aa, Bjørn André, Rehmsmeier, Marc
Published in PloS one (09.09.2022)

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Efficiently accelerated bioimage analysis with NanoPyx, a Liquid Engine-powered Python framework

by Saraiva, Bruno M., Cunha, Inês, Brito, António D., Follain, Gautier, Portela, Raquel, Haase, Robert, Pereira, Pedro M., Jacquemet, Guillaume, Henriques, Ricardo
Published in Nature methods (01.02.2025)

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MultilayerPy (v1.0): a Python-based framework for building, running and optimising kinetic multi-layer models of aerosols and films

by Milsom, Adam, Lees, Amy, Squires, Adam M., Pfrang, Christian
Published in Geoscientific Model Development (22.09.2022)

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Towards understanding bugs in Python interpreters

by Liu, Di, Feng, Yang, Yan, Yanyan, Xu, Baowen
Published in Empirical software engineering : an international journal (01.01.2023)

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OTSun, a python package for the optical analysis of solar-thermal collectors and photovoltaic cells with arbitrary geometry

by Cardona, Gabriel, Pujol-Nadal, Ramon
Published in PloS one (14.10.2020)

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Extending Power BI with Python and R : perform advanced analysis using the power of analytical languages

by Zavarella, Luca
Year of Publication 2024

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pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

by Warris, Sven, Timal, N. Roshan N., Kempenaar, Marcel, Poortinga, Arne M., van de Geest, Henri, Varbanescu, Ana L., Nap, Jan-Peter
Published in PloS one (02.01.2018)

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2FAST2Q: a general-purpose sequence search and counting program for FASTQ files

by Bravo, Afonso M., Typas, Athanasios, Veening, Jan-Willem
Published in PeerJ (San Francisco, CA) (25.10.2022)

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Color Simulation of Multilayered Thin Films Using Python

by Lee, Dongik, Lee, Seunghun
Published in Applied sciences (01.05.2025)

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pyESDv1.0.1: an open-source Python framework for empirical-statistical downscaling of climate information

by Boateng, Daniel, Mutz, Sebastian G.
Published in Geoscientific Model Development (14.11.2023)

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A review of open software resources in python for electrical resistivity modelling

by Doyoro, Yonatan Garkebo, Chang, Ping-Yu, Puntu, Jordi Mahardika, Lin, Ding-Jiun, Van Huu, Tran, Rahmalia, Diah Ayu, Shie, Meng-Shiun
Published in Geoscience letters (13.01.2022)

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