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APIScanner - Towards Automated Detection of Deprecated APIs in Python Libraries
Vadlamani, Aparna, Kalicheti, Rishitha, Chimalakonda, Sridhar
Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
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Conference Proceeding
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
How Do Python Framework APIs Evolve? An Exploratory Study
Zhang, Zhaoxu, Zhu, Hengcheng, Wen, Ming, Tao, Yida, Liu, Yepang, Xiong, Yingfei
Published in 2020 IEEE 27th International Conference on Software Analysis, Evolution and Reengineering (SANER) (01.02.2020)
Published in 2020 IEEE 27th International Conference on Software Analysis, Evolution and Reengineering (SANER) (01.02.2020)
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Conference Proceeding
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article
DrPy: Pinpointing Inefficient Memory Usage in Multi-Layer Python Applications
Cui, Jinku, Zhao, Qidong, Hao, Yueming, Liu, Xu
Published in Proceedings / International Symposium on Code Generation and Optimization (02.03.2024)
Published in Proceedings / International Symposium on Code Generation and Optimization (02.03.2024)
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Conference Proceeding
Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN
Kinman, Laurel F., Powell, Barrett M., Zhong, Ellen D., Berger, Bonnie, Davis, Joseph H.
Published in Nature protocols (01.02.2023)
Published in Nature protocols (01.02.2023)
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Journal Article
ESBMC 5.0: An Industrial-Strength C Model Checker
Gadelha, Mikhail R., Monteiro, Felipe R., Morse, Jeremy, Cordeiro, Lucas C., Fischer, Bernd, Nicole, Denis A.
Published in 2018 33rd IEEE/ACM International Conference on Automated Software Engineering (ASE) (01.09.2018)
Published in 2018 33rd IEEE/ACM International Conference on Automated Software Engineering (ASE) (01.09.2018)
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Conference Proceeding
Processor Array Architectures for Scalable Radix 4 Montgomery Modular Multiplication Algorithm
Ibrahim, A, Gebali, F, Elsimary, H, Nassar, A
Published in IEEE transactions on parallel and distributed systems (01.07.2011)
Published in IEEE transactions on parallel and distributed systems (01.07.2011)
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Journal Article
Toward a unified framework for interpreting machine-learning models in neuroimaging
Kohoutová, Lada, Heo, Juyeon, Cha, Sungmin, Lee, Sungwoo, Moon, Taesup, Wager, Tor D., Woo, Choong-Wan
Published in Nature protocols (01.04.2020)
Published in Nature protocols (01.04.2020)
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Journal Article
Portable BLAST-like algorithm library and its implementations for command line, Python, and R
Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)
Published in PloS one (30.11.2023)
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Journal Article