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    Portable BLAST-like algorithm library and its implementations for command line, Python, and R
                                      
                                            Schmid, Steven,                              Jeevannavar, Aditya,                              Julian, Timothy R.,                              Tamminen, Manu                              
Published in PloS one (30.11.2023)
                   
      
      
                                                  Published in PloS one (30.11.2023)
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          Innovative UAV LiDAR Generated Point-Cloud Processing Algorithm in Python for Unsupervised Detection and Analysis of Agricultural Field-Plots
                                      
                                            Polák, Michal,                              Miřijovský, Jakub,                              Hernándiz, Alba E.,                              Špíšek, Zdeněk,                              Koprna, Radoslav,                              Humplík, Jan F.                              
Published in Remote sensing (Basel, Switzerland) (10.08.2021)
                   
      
      
                                                  Published in Remote sensing (Basel, Switzerland) (10.08.2021)
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          PyImageJ: A library for integrating ImageJ and Python
                                      
                                            Rueden, Curtis T.,                              Hiner, Mark C.,                              Evans, Edward L.,                              Pinkert, Michael A.,                              Lucas, Alice M.,                              Carpenter, Anne E.,                              Cimini, Beth A.,                              Eliceiri, Kevin W.                              
Published in Nature methods (01.11.2022)
                   
      
      
                                                  Published in Nature methods (01.11.2022)
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          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          CFPy —A Python Package for Pre‐ and Postprocessing of the Conduit Flow Process of MODFLOW
                                      
                                            Reimann, Thomas,                              Rudolph, Max Gustav,                              Grabow, Leonard,                              Noffz, Torsten                              
Published in Ground water (01.11.2023)
                   
      
      
                                                  Published in Ground water (01.11.2023)
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          Evaluating machine learning algorithms to predict lameness in dairy cattle
                                      
                                            Neupane, Rajesh,                              Aryal, Ashrant,                              Haeussermann, Angelika,                              Hartung, Eberhard,                              Pinedo, Pablo,                              Paudyal, Sushil                              
Published in PloS one (18.07.2024)
                   
      
      
                                                  Published in PloS one (18.07.2024)
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          QuOCS: The quantum optimal control suite
                                      
                                            Rossignolo, Marco,                              Reisser, Thomas,                              Marshall, Alastair,                              Rembold, Phila,                              Pagano, Alice,                              Vetter, Philipp J.,                              Said, Ressa S.,                              Müller, Matthias M.,                              Motzoi, Felix,                              Calarco, Tommaso,                              Jelezko, Fedor,                              Montangero, Simone                              
Published in Computer physics communications (01.10.2023)
                   
      
      
                                                  Published in Computer physics communications (01.10.2023)
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          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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          PyRates—A Python framework for rate-based neural simulations
                                      
                                            Gast, Richard,                              Rose, Daniel,                              Salomon, Christoph,                              Möller, Harald E.,                              Weiskopf, Nikolaus,                              Knösche, Thomas R.                              
Published in PloS one (16.12.2019)
                   
      
      
                                                  Published in PloS one (16.12.2019)
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