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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Improved social network search algorithm coupled with Lagrange method for extracting the best parameter of photovoltaic modules and array
Gnetchejo, Patrick Juvet, Ndjakomo Essiane, Salomé, Dadjé, Abdouramani, Mbadjoun Wapet, Daniel Eutyche, Ele, Pierre, Chen, Zhicong
Published in International journal of energy and environmental engineering (01.09.2023)
Published in International journal of energy and environmental engineering (01.09.2023)
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Journal Article
Portable BLAST-like algorithm library and its implementations for command line, Python, and R
Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)
Published in PloS one (30.11.2023)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article
RNA-Seq Mapping and Detection of Gene Fusions with a Suffix Array Algorithm
Sakarya, Onur, Breu, Heinz, Radovich, Milan, Chen, Yongzhi, Wang, Yulei N., Barbacioru, Catalin, Utiramerur, Sowmi, Whitley, Penn P., Brockman, Joel P., Vatta, Paolo, Zhang, Zheng, Popescu, Liviu, Muller, Matthew W., Kudlingar, Vidya, Garg, Nriti, Li, Chieh-Yuan, Kong, Benjamin S., Bodeau, John P., Nutter, Robert C., Gu, Jian, Bramlett, Kelli S., Ichikawa, Jeffrey K., Hyland, Fiona C., Siddiqui, Asim S.
Published in PLoS computational biology (01.04.2012)
Published in PLoS computational biology (01.04.2012)
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Journal Article
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
Toward a unified framework for interpreting machine-learning models in neuroimaging
Kohoutová, Lada, Heo, Juyeon, Cha, Sungmin, Lee, Sungwoo, Moon, Taesup, Wager, Tor D., Woo, Choong-Wan
Published in Nature protocols (01.04.2020)
Published in Nature protocols (01.04.2020)
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Journal Article
Partial Covering Arrays: Algorithms and Asymptotics
Sarkar, Kaushik, Colbourn, Charles J., De Bonis, Annalisa, Vaccaro, Ugo
Published in Theory of computing systems (01.08.2018)
Published in Theory of computing systems (01.08.2018)
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Journal Article
Bioinformatic pipelines in Python with Leaf
Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)
Published in BMC bioinformatics (21.06.2013)
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Journal Article
AltWOA: Altruistic Whale Optimization Algorithm for feature selection on microarray datasets
Kundu, Rohit, Chattopadhyay, Soham, Cuevas, Erik, Sarkar, Ram
Published in Computers in biology and medicine (01.05.2022)
Published in Computers in biology and medicine (01.05.2022)
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Journal Article
A gene selection algorithm for microarray cancer classification using an improved particle swarm optimization
Nagra, Arfan Ali, Khan, Ali Haider, Abubakar, Muhammad, Faheem, Muhammad, Rasool, Adil, Masood, Khalid, Hussain, Muzammil
Published in Scientific reports (23.08.2024)
Published in Scientific reports (23.08.2024)
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Journal Article
Design of Multichannel Spectrum Intelligence Systems Using Approximate Discrete Fourier Transform Algorithm for Antenna Array-Based Spectrum Perception Applications
Madanayake, Arjuna, Lawrance, Keththura, Kumarasiri, Bopage Umesha, Sivasankar, Sivakumar, Gunaratne, Thushara, Edussooriya, Chamira U. S., Cintra, Renato J.
Published in Algorithms (01.08.2024)
Published in Algorithms (01.08.2024)
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Journal Article