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SciPy 1.0: fundamental algorithms for scientific computing in Python

by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)

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Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python

by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)

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A model-based circular binary segmentation algorithm for the analysis of array CGH data

by Hsu, Fang-Han, Chen, Hung-I H, Tsai, Mong-Hsun, Lai, Liang-Chuan, Huang, Chi-Cheng, Tu, Shih-Hsin, Chuang, Eric Y, Chen, Yidong
Published in BMC research notes (10.10.2011)

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Efficient multi-objective calibration of a computationally intensive hydrologic model with parallel computing software in Python

by Zhang, Xuesong, Beeson, Peter, Link, Robert, Manowitz, David, Izaurralde, Roberto C., Sadeghi, Ali, Thomson, Allison M., Sahajpal, Ritvik, Srinivasan, Raghavan, Arnold, Jeffrey G.
Published in Environmental modelling & software : with environment data news (01.08.2013)

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Machine learning modeling of base flow generation potential: A case study of the combined application of BWM and Fallback bargaining algorithm

by Nasiri Khiavi, Ali
Published in Journal of hydrology (Amsterdam) (01.06.2024)

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Biotite: a unifying open source computational biology framework in Python

by Kunzmann, Patrick, Hamacher, Kay
Published in BMC bioinformatics (01.10.2018)

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Machine learning algorithms for predicting electrical load demand: an evaluation and comparison

by Goswami, Kakoli, Kandali, Aditya Bihar
Published in Sadhana (Bangalore) (25.01.2024)

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PyAMARES, an Open-Source Python Library for Fitting Magnetic Resonance Spectroscopy Data

by Xu, Jia, Vaeggemose, Michael, Schulte, Rolf F., Yang, Baolian, Lee, Chu-Yu, Laustsen, Christoffer, Magnotta, Vincent A.
Published in Diagnostics (Basel) (01.12.2024)

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General Method for Speeding Up Kinetic Monte Carlo Simulations

by Rego, Artur S. C, Brandão, Amanda L. T
Published in Industrial & engineering chemistry research (13.05.2020)

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Distributed Algorithms for Array Signal Processing

by Chen, Po-Chih, Vaidyanathan, Palghat
Published in IEEE transactions on signal processing (2021)

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

by Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)

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Machine learning algorithms predict breast cancer incidence risk: a data-driven retrospective study based on biochemical biomarkers

by Guo, Qianqian, Wu, Peng, He, Junhao, Zhang, Ge, Zhou, Wu, Chen, Qianjun
Published in BMC cancer (01.07.2025)

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Shooting the Numerical Solution of Moisture Flow Equation with Root Water Uptake Models: A Python Tool

by Difonzo, Fabio V., Masciopinto, Costantino, Vurro, Michele, Berardi, Marco
Published in Water resources management (01.06.2021)

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Python workflow for the selection and identification of marker peptides—proof-of-principle study with heated milk

by Kuhnen, Gesine, Class, Lisa-Carina, Badekow, Svenja, Hanisch, Kim Lara, Rohn, Sascha, Kuballa, Jürgen
Published in Analytical and bioanalytical chemistry (01.06.2024)

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Parallel distributed computing using Python

by Dalcin, Lisandro D., Paz, Rodrigo R., Kler, Pablo A., Cosimo, Alejandro
Published in Advances in water resources (01.09.2011)

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The Quantification of Myocardial Fibrosis on Human Histopathology Images by a Semi-Automatic Algorithm

by Gonciar, Diana, Berciu, Alexandru-George, Danku, Alex Ede, Lorenzovici, Noemi, Dulf, Eva-Henrietta, Mocan, Teodora, Nicula, Sorina-Melinda, Agoston-Coldea, Lucia
Published in Applied sciences (01.09.2024)

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Comprehensive Evaluation of Satellite-Based Rainfall Measurements Through Rain Gauge Validation Using Advanced Statistical Regression and Machine Learning Models by Using Python: Comprehensive Evaluation of Satellite-Based Rainfall Measurements Through Rain Gauge Validation Using Advanced Statistical Regression and Machine Learning Models by Using Python

by Sumith, K V
Published in Water resources management (01.07.2025)

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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

by Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)

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Nmrglue: an open source Python package for the analysis of multidimensional NMR data

by Helmus, Jonathan J., Jaroniec, Christopher P.
Published in Journal of biomolecular NMR (01.04.2013)

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Concordance of copy number abnormality detection using SNP arrays and Multiplex Ligation-dependent Probe Amplification (MLPA) in acute lymphoblastic leukaemia

by Bashton, Matthew, Hollis, Robin, Ryan, Sarra, Schwab, Claire J., Moppett, John, Harrison, Christine J., Moorman, Anthony V., Enshaei, Amir
Published in Scientific reports (08.01.2020)

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