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Portable BLAST-like algorithm library and its implementations for command line, Python, and R

by Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)

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Design of Heuristic Algorithms for Hard Optimization: With Python Codes for the Travelling Salesman Problem

by Taillard, Eric D
Year of Publication 2023

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Artificial Intelligence with Python Cookbook - Proven Recipes for Applying AI Algorithms and Deep Learning Techniques Using TensorFlow 2.x and PyTorch 1.6

by Kumar, Ritesh, Auffarth, Ben
Year of Publication 2020

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

by Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)

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Journal Article

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PyImageJ: A library for integrating ImageJ and Python

by Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)

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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

by Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)

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Music Representation and Transformation in Software: Structure and Algorithms in Python

by Pazel, Donald P
Year of Publication 2022

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Concordance of copy number abnormality detection using SNP arrays and Multiplex Ligation-dependent Probe Amplification (MLPA) in acute lymphoblastic leukaemia

by Bashton, Matthew, Hollis, Robin, Ryan, Sarra, Schwab, Claire J., Moppett, John, Harrison, Christine J., Moorman, Anthony V., Enshaei, Amir
Published in Scientific reports (08.01.2020)

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PyRates—A Python framework for rate-based neural simulations

by Gast, Richard, Rose, Daniel, Salomon, Christoph, Möller, Harald E., Weiskopf, Nikolaus, Knösche, Thomas R.
Published in PloS one (16.12.2019)

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Journal Article

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MEG and EEG data analysis with MNE-Python

by Gramfort, Alexandre
Published in Frontiers in neuroscience (26.12.2013)

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Development of Algorithms and Software for Modeling Controlled Dynamic Systems Using Symbolic Computations and Stochastic Methods

by Demidova, A. V., Druzhinina, O. V., Masina, O. N., Petrov, A. A.
Published in Programming and computer software (01.04.2023)

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Improved Petrophysical Property Evaluation of Shaly Sand Reservoirs Using Modified Grey Wolf Intelligence Algorithm

by Jia, Bao, Xian, Chenggang, Jia, Wenfeng, Su, Jianzheng
Published in Computational geosciences (01.08.2023)

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2FAST2Q: a general-purpose sequence search and counting program for FASTQ files

by Bravo, Afonso M., Typas, Athanasios, Veening, Jan-Willem
Published in PeerJ (San Francisco, CA) (25.10.2022)

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The Discrete Math Workbook: A Companion Manual Using Python

by Kurgalin, Sergei, Borzunov, Sergei
Year of Publication 2020

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A Python Clustering Analysis Protocol of Genes Expression Data Sets

by Agapito, Giuseppe, Milano, Marianna, Cannataro, Mario
Published in Genes (12.10.2022)

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Artificial Intelligence for Robotics - Build Intelligent Robots Using ROS 2, Python, OpenCV, and AI/ML Techniques for Real-World Tasks

by Govers, Francis X, Namuduri, Kamesh
Year of Publication 2024

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Research on intelligent knowledge representation method and algorithm based on basic-element theory

by Hu Ruo, Wang Huajia, Xu, Hong, Hui-min, Zhao
Published in Neural computing & applications (01.05.2020)

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Python algorithms in particle tracking microrheology

by Maier, Timo, Haraszti, Tamás
Published in BMC chemistry (27.11.2012)

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Component-oriented acausal modeling of the dynamical systems in Python language on the example of the model of the sucker rod string

by Kopei, Volodymyr B., Onysko, Oleh R., Panchuk, Vitalii G.
Published in PeerJ. Computer science (28.10.2019)

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Practical Explainable AI Using Python - Artificial Intelligence Model Explanations Using Python-Based Libraries, Extensions, and Frameworks

by Mishra, Pradeepta
Year of Publication 2022

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