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SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Parallel distributed computing using Python
Dalcin, Lisandro D., Paz, Rodrigo R., Kler, Pablo A., Cosimo, Alejandro
Published in Advances in water resources (01.09.2011)
Published in Advances in water resources (01.09.2011)
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Journal Article
Core Imaging Library - Part I: a versatile Python framework for tomographic imaging
Jørgensen, J. S., Ametova, E., Burca, G., Fardell, G., Papoutsellis, E., Pasca, E., Thielemans, K., Turner, M., Warr, R., Lionheart, W. R. B., Withers, P. J.
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (23.08.2021)
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (23.08.2021)
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Journal Article
AnalyZr: A Python application for zircon grain image segmentation and shape analysis
Scharf, T., Kirkland, C.L., Daggitt, M.L., Barham, M., Puzyrev, V.
Published in Computers & geosciences (01.05.2022)
Published in Computers & geosciences (01.05.2022)
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Journal Article
CFPy —A Python Package for Pre‐ and Postprocessing of the Conduit Flow Process of MODFLOW
Reimann, Thomas, Rudolph, Max Gustav, Grabow, Leonard, Noffz, Torsten
Published in Ground water (01.11.2023)
Published in Ground water (01.11.2023)
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Journal Article
Python workflow for the selection and identification of marker peptides—proof-of-principle study with heated milk
Kuhnen, Gesine, Class, Lisa-Carina, Badekow, Svenja, Hanisch, Kim Lara, Rohn, Sascha, Kuballa, Jürgen
Published in Analytical and bioanalytical chemistry (01.06.2024)
Published in Analytical and bioanalytical chemistry (01.06.2024)
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Journal Article
SAB: An open-access Python-based integrated platform for fully automated emergent sustainability assessment of biorefineries
Zarafshani, Hanie, Watjanatepin, Ponnapat, Navare, Kranti, Sauve, Giovanna, Van Acker, Karel
Published in The international journal of life cycle assessment (01.04.2024)
Published in The international journal of life cycle assessment (01.04.2024)
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Journal Article
Efficient multi-objective calibration of a computationally intensive hydrologic model with parallel computing software in Python
Zhang, Xuesong, Beeson, Peter, Link, Robert, Manowitz, David, Izaurralde, Roberto C., Sadeghi, Ali, Thomson, Allison M., Sahajpal, Ritvik, Srinivasan, Raghavan, Arnold, Jeffrey G.
Published in Environmental modelling & software : with environment data news (01.08.2013)
Published in Environmental modelling & software : with environment data news (01.08.2013)
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Journal Article
ABC-SysBio—approximate Bayesian computation in Python with GPU support
Liepe, Juliane, Barnes, Chris, Cule, Erika, Erguler, Kamil, Kirk, Paul, Toni, Tina, Stumpf, Michael P.H.
Published in Bioinformatics (15.07.2010)
Published in Bioinformatics (15.07.2010)
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Journal Article