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PyImageJ: A library for integrating ImageJ and Python
Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
VMseg: Using spatial variance to automatically segment retinal non-perfusion on OCT-angiography
LE BOITE, Hugo, COUTURIER, Aude, TADAYONI, Ramin, LAMARD, Mathieu, QUELLEC, Gwenolé
Published in PloS one (07.08.2024)
Published in PloS one (07.08.2024)
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Journal Article
GLAMbox: A Python toolbox for investigating the association between gaze allocation and decision behaviour
Molter, Felix, Thomas, Armin W, Heekeren, Hauke R, Mohr, Peter N. C
Published in PloS one (16.12.2019)
Published in PloS one (16.12.2019)
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Journal Article
Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project
Henriques, Rafael Neto, Correia, Marta M., Marrale, Maurizio, Huber, Elizabeth, Kruper, John, Koudoro, Serge, Yeatman, Jason D., Garyfallidis, Eleftherios, Rokem, Ariel
Published in Frontiers in human neuroscience (19.07.2021)
Published in Frontiers in human neuroscience (19.07.2021)
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Journal Article
QuOCS: The quantum optimal control suite
Rossignolo, Marco, Reisser, Thomas, Marshall, Alastair, Rembold, Phila, Pagano, Alice, Vetter, Philipp J., Said, Ressa S., Müller, Matthias M., Motzoi, Felix, Calarco, Tommaso, Jelezko, Fedor, Montangero, Simone
Published in Computer physics communications (01.10.2023)
Published in Computer physics communications (01.10.2023)
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Journal Article
Prediction of stunting and its socioeconomic determinants among adolescent girls in Ethiopia using machine learning algorithms
Zemariam, Alemu Birara, Abate, Biruk Beletew, Alamaw, Addis Wondmagegn, Lake, Eyob shitie, Yilak, Gizachew, Ayele, Mulat, Tilahun, Befkad Derese, Ngusie, Habtamu Setegn
Published in PloS one (24.01.2025)
Published in PloS one (24.01.2025)
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Journal Article
frvcpy: An Open-Source Solver for the Fixed Route Vehicle Charging Problem
Kullman, Nicholas D., Froger, Aurelien, Mendoza, Jorge E., Goodson, Justin C.
Published in INFORMS journal on computing (01.10.2021)
Published in INFORMS journal on computing (01.10.2021)
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Journal Article
Screening for Parkinson’s disease using “computer vision”
Kasemsap, Narongrit, Tikkapanyo, Purinat, Wanjantuk, Panupong, Vorasoot, Nisa, Kongbunkiat, Kannikar, Panitchote, Anupol
Published in PloS one (12.08.2025)
Published in PloS one (12.08.2025)
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Journal Article
Natural language processing augments comorbidity documentation in neurosurgical inpatient admissions
Sastry, Rahul A., Setty, Aayush, Liu, David D., Zheng, Bryan, Ali, Rohaid, Weil, Robert J., Roye, G. Dean, Doberstein, Curtis E., Oyelese, Adetokunbo A., Niu, Tianyi, Gokaslan, Ziya L., Telfeian, Albert E.
Published in PloS one (09.05.2024)
Published in PloS one (09.05.2024)
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Journal Article
FORCETRACKER: A versatile tool for standardized assessment of tissue contractile properties in 3D Heart-on-Chip platforms
Rivera-Arbeláez, José M, Dostanić, Milica, Windt, Laura M, Stein, Jeroen M, Cofiño-Fabres, Carla, Boonen, Tom, Wiendels, Maury, van den Berg, Albert, Segerink, Loes I, Mummery, Christine L, Sarro, Pasqualina M, van Meer, Berend J, Ribeiro, Marcelo C, Mastrangeli, Massimo, Passier, Robert
Published in PloS one (13.02.2025)
Published in PloS one (13.02.2025)
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Journal Article
Predictive value of machine learning-based T2-weighted MRI radiomics in the diagnosis of polycystic ovary syndrome
Rona, Gunay, Fistikcioglu, Neriman, Serel, Tekin Ahmet, Arifoglu, Meral, Eser, Mehmet Bilgin, Ozcelik, Serhat, Aydin, Kadriye
Published in Northern Clinics of Istanbul (01.01.2025)
Published in Northern Clinics of Istanbul (01.01.2025)
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Journal Article