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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences
Chen, Zhen, Zhao, Pei, Li, Fuyi, Leier, André, Marquez-Lago, Tatiana T, Wang, Yanan, Webb, Geoffrey I, Smith, A Ian, Daly, Roger J, Chou, Kuo-Chen, Song, Jiangning
Published in Bioinformatics (15.07.2018)
Published in Bioinformatics (15.07.2018)
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Journal Article
Evaluation of the classification of medical and laboratory services using a python algorithm and physical statistically
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Journal Article
Conference Proceeding
New Python-based methods for data processing
Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
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Journal Article
Dyconnmap: Dynamic connectome mapping—A neuroimaging python module
Marimpis, Avraam D., Dimitriadis, Stavros I., Goebel, Rainer
Published in Human brain mapping (15.10.2021)
Published in Human brain mapping (15.10.2021)
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Journal Article
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
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Journal Article
reciprocalspaceship: a Python library for crystallographic data analysis
Greisman, Jack B., Dalton, Kevin M., Hekstra, Doeke R.
Published in Journal of applied crystallography (01.10.2021)
Published in Journal of applied crystallography (01.10.2021)
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Journal Article
Python in neuroscience
Muller, Eilif, Bednar, James A., Diesmann, Markus, Gewaltig, Marc-Oliver, Hines, Michael, Davison, Andrew P.
Published in Frontiers in neuroinformatics (14.04.2015)
Published in Frontiers in neuroinformatics (14.04.2015)
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Journal Article