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    Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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              Journal Article
          
              
          VMseg: Using spatial variance to automatically segment retinal non-perfusion on OCT-angiography
                                      
                                            LE BOITE, Hugo,                              COUTURIER, Aude,                              TADAYONI, Ramin,                              LAMARD, Mathieu,                              QUELLEC, Gwenolé                              
Published in PloS one (07.08.2024)
                   
      
      
                                                  Published in PloS one (07.08.2024)
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              Journal Article
          
              
          Short communication: age2exhume – a MATLAB/Python script to calculate steady-state vertical exhumation rates from thermochronometric ages and application to the Himalaya
                                      
                                            van der Beek, Peter,                              Schildgen, Taylor F.                              
Published in Geochronology (Göttingen. Online) (16.01.2023)
                   
      
      
                                                  Published in Geochronology (Göttingen. Online) (16.01.2023)
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          Dyconnmap: Dynamic connectome mapping—A neuroimaging python module
                                      
                                            Marimpis, Avraam D.,                              Dimitriadis, Stavros I.,                              Goebel, Rainer                              
Published in Human brain mapping (15.10.2021)
                   
      
      
                                                  Published in Human brain mapping (15.10.2021)
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              Journal Article
          
              
          Screening for Parkinson’s disease using “computer vision”
                                      
                                            Kasemsap, Narongrit,                              Tikkapanyo, Purinat,                              Wanjantuk, Panupong,                              Vorasoot, Nisa,                              Kongbunkiat, Kannikar,                              Panitchote, Anupol                              
Published in PloS one (12.08.2025)
                   
      
      
                                                  Published in PloS one (12.08.2025)
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          A New Tool for Extracting Static and Dynamic Parameters from [18F]F-DOPA PET/CT in Pediatric Gliomas
                                      
                                            Mureddu, Michele,                              Funck, Thomas,                              Morana, Giovanni,                              Rossi, Andrea,                              Ramaglia, Antonia,                              Milanaccio, Claudia,                              Verrico, Antonio,                              Bottoni, Gianluca,                              Fiz, Francesco,                              Piccardo, Arnoldo,                              Fato, Marco Massimo,                              Trò, Rosella                              
Published in Journal of clinical medicine (19.10.2024)
                   
      
      
                                                  Published in Journal of clinical medicine (19.10.2024)
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          Recent developments in the PHENIX software for automated crystallographic structure determination
                                      
                                            Adams, Paul D.,                              Gopal, Kreshna,                              Grosse-Kunstleve, Ralf W.,                              Hung, Li-Wei,                              Ioerger, Thomas R.,                              McCoy, Airlie J.,                              Moriarty, Nigel W.,                              Pai, Reetal K.,                              Read, Randy J.,                              Romo, Tod D.,                              Sacchettini, James C.,                              Sauter, Nicholas K.,                              Storoni, Laurent C.,                              Terwilliger, Thomas C.                              
Published in Journal of synchrotron radiation (01.01.2004)
                   
      
      
                                                  Published in Journal of synchrotron radiation (01.01.2004)
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              Journal Article
        Conference Proceeding
          
              
          Data on Cu- and Ni-Si-Mn-rich solute clustering in a neutron irradiated austenitic stainless steel
                                      
                                            Levine, Samara M.,                              Pareige, Cristelle,                              Jiao, Zhijie,                              Edmondson, Philip D.,                              Was, Gary S.,                              Zinkle, Steven J.,                              Bhattacharya, Arunodaya                              
Published in Data in brief (01.06.2022)
                   
      
      
                                                  Published in Data in brief (01.06.2022)
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