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    Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          VMseg: Using spatial variance to automatically segment retinal non-perfusion on OCT-angiography
                                      
                                            LE BOITE, Hugo,                              COUTURIER, Aude,                              TADAYONI, Ramin,                              LAMARD, Mathieu,                              QUELLEC, Gwenolé                              
Published in PloS one (07.08.2024)
                   
      
      
                                                  Published in PloS one (07.08.2024)
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          Short communication: age2exhume – a MATLAB/Python script to calculate steady-state vertical exhumation rates from thermochronometric ages and application to the Himalaya
                                      
                                            van der Beek, Peter,                              Schildgen, Taylor F.                              
Published in Geochronology (Göttingen. Online) (16.01.2023)
                   
      
      
                                                  Published in Geochronology (Göttingen. Online) (16.01.2023)
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          Screening for Parkinson’s disease using “computer vision”
                                      
                                            Kasemsap, Narongrit,                              Tikkapanyo, Purinat,                              Wanjantuk, Panupong,                              Vorasoot, Nisa,                              Kongbunkiat, Kannikar,                              Panitchote, Anupol                              
Published in PloS one (12.08.2025)
                   
      
      
                                                  Published in PloS one (12.08.2025)
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          A New Tool for Extracting Static and Dynamic Parameters from [18F]F-DOPA PET/CT in Pediatric Gliomas
                                      
                                            Mureddu, Michele,                              Funck, Thomas,                              Morana, Giovanni,                              Rossi, Andrea,                              Ramaglia, Antonia,                              Milanaccio, Claudia,                              Verrico, Antonio,                              Bottoni, Gianluca,                              Fiz, Francesco,                              Piccardo, Arnoldo,                              Fato, Marco Massimo,                              Trò, Rosella                              
Published in Journal of clinical medicine (19.10.2024)
                   
      
      
                                                  Published in Journal of clinical medicine (19.10.2024)
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          Recent developments in the PHENIX software for automated crystallographic structure determination
                                      
                                            Adams, Paul D.,                              Gopal, Kreshna,                              Grosse-Kunstleve, Ralf W.,                              Hung, Li-Wei,                              Ioerger, Thomas R.,                              McCoy, Airlie J.,                              Moriarty, Nigel W.,                              Pai, Reetal K.,                              Read, Randy J.,                              Romo, Tod D.,                              Sacchettini, James C.,                              Sauter, Nicholas K.,                              Storoni, Laurent C.,                              Terwilliger, Thomas C.                              
Published in Journal of synchrotron radiation (01.01.2004)
                   
      
      
                                                  Published in Journal of synchrotron radiation (01.01.2004)
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        Conference Proceeding
          
              
          Data on Cu- and Ni-Si-Mn-rich solute clustering in a neutron irradiated austenitic stainless steel
                                      
                                            Levine, Samara M.,                              Pareige, Cristelle,                              Jiao, Zhijie,                              Edmondson, Philip D.,                              Was, Gary S.,                              Zinkle, Steven J.,                              Bhattacharya, Arunodaya                              
Published in Data in brief (01.06.2022)
                   
      
      
                                                  Published in Data in brief (01.06.2022)
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          Interactive Machine Learning Chatbot: Developing a Self-Learning Conversational bot using Python for Dynamic Knowledge Management
                                      
                                            Kannan, K Nattar,                              Vijayaragavan, P.,                              Jaini, Santosh,                              Katikireddi, Phani Monogya,                              Balasundaram, N.,                              T, Chidananda                              
Published in International Conference on Computing, Communication and Automation (Online) (22.11.2024)
                   
      
      
                                                  Published in International Conference on Computing, Communication and Automation (Online) (22.11.2024)
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              Conference Proceeding
          
              
          PHENIX: a comprehensive Python-based system for macromolecular structure solution
                                      
                                            Adams, Paul D.,                              Afonine, Pavel V.,                              Bunkóczi, Gábor,                              Chen, Vincent B.,                              Davis, Ian W.,                              Echols, Nathaniel,                              Headd, Jeffrey J.,                              Hung, Li-Wei,                              Kapral, Gary J.,                              Grosse-Kunstleve, Ralf W.,                              McCoy, Airlie J.,                              Moriarty, Nigel W.,                              Oeffner, Robert,                              Read, Randy J.,                              Richardson, David C.,                              Richardson, Jane S.,                              Terwilliger, Thomas C.,                              Zwart, Peter H.                              
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
                   
      
      
                                                  Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
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          iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences
                                      
                                            Chen, Zhen,                              Zhao, Pei,                              Li, Fuyi,                              Leier, André,                              Marquez-Lago, Tatiana T,                              Wang, Yanan,                              Webb, Geoffrey I,                              Smith, A Ian,                              Daly, Roger J,                              Chou, Kuo-Chen,                              Song, Jiangning                              
Published in Bioinformatics (15.07.2018)
                   
      
      
                                                  Published in Bioinformatics (15.07.2018)
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