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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
VMseg: Using spatial variance to automatically segment retinal non-perfusion on OCT-angiography
LE BOITE, Hugo, COUTURIER, Aude, TADAYONI, Ramin, LAMARD, Mathieu, QUELLEC, Gwenolé
Published in PloS one (07.08.2024)
Published in PloS one (07.08.2024)
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Journal Article
Short communication: age2exhume – a MATLAB/Python script to calculate steady-state vertical exhumation rates from thermochronometric ages and application to the Himalaya
van der Beek, Peter, Schildgen, Taylor F.
Published in Geochronology (Göttingen. Online) (16.01.2023)
Published in Geochronology (Göttingen. Online) (16.01.2023)
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Journal Article
Screening for Parkinson’s disease using “computer vision”
Kasemsap, Narongrit, Tikkapanyo, Purinat, Wanjantuk, Panupong, Vorasoot, Nisa, Kongbunkiat, Kannikar, Panitchote, Anupol
Published in PloS one (12.08.2025)
Published in PloS one (12.08.2025)
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Journal Article
A New Tool for Extracting Static and Dynamic Parameters from [18F]F-DOPA PET/CT in Pediatric Gliomas
Mureddu, Michele, Funck, Thomas, Morana, Giovanni, Rossi, Andrea, Ramaglia, Antonia, Milanaccio, Claudia, Verrico, Antonio, Bottoni, Gianluca, Fiz, Francesco, Piccardo, Arnoldo, Fato, Marco Massimo, Trò, Rosella
Published in Journal of clinical medicine (19.10.2024)
Published in Journal of clinical medicine (19.10.2024)
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Journal Article
Recent developments in the PHENIX software for automated crystallographic structure determination
Adams, Paul D., Gopal, Kreshna, Grosse-Kunstleve, Ralf W., Hung, Li-Wei, Ioerger, Thomas R., McCoy, Airlie J., Moriarty, Nigel W., Pai, Reetal K., Read, Randy J., Romo, Tod D., Sacchettini, James C., Sauter, Nicholas K., Storoni, Laurent C., Terwilliger, Thomas C.
Published in Journal of synchrotron radiation (01.01.2004)
Published in Journal of synchrotron radiation (01.01.2004)
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Journal Article
Conference Proceeding
Data on Cu- and Ni-Si-Mn-rich solute clustering in a neutron irradiated austenitic stainless steel
Levine, Samara M., Pareige, Cristelle, Jiao, Zhijie, Edmondson, Philip D., Was, Gary S., Zinkle, Steven J., Bhattacharya, Arunodaya
Published in Data in brief (01.06.2022)
Published in Data in brief (01.06.2022)
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Journal Article
Interactive Machine Learning Chatbot: Developing a Self-Learning Conversational bot using Python for Dynamic Knowledge Management
Kannan, K Nattar, Vijayaragavan, P., Jaini, Santosh, Katikireddi, Phani Monogya, Balasundaram, N., T, Chidananda
Published in International Conference on Computing, Communication and Automation (Online) (22.11.2024)
Published in International Conference on Computing, Communication and Automation (Online) (22.11.2024)
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Conference Proceeding
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
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Journal Article
iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences
Chen, Zhen, Zhao, Pei, Li, Fuyi, Leier, André, Marquez-Lago, Tatiana T, Wang, Yanan, Webb, Geoffrey I, Smith, A Ian, Daly, Roger J, Chou, Kuo-Chen, Song, Jiangning
Published in Bioinformatics (15.07.2018)
Published in Bioinformatics (15.07.2018)
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Journal Article