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PyAGH: a python package to fast construct kinship matrices based on different levels of omic data
Zhao, Wei, Qadri, Qamar Raza, Zhang, Zhenyang, Wang, Zhen, Pan, Yuchun, Wang, Qishan, Zhang, Zhe
Published in BMC bioinformatics (18.04.2023)
Published in BMC bioinformatics (18.04.2023)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools
O'Callaghan, Sean, De Souza, David P, Isaac, Andrew, Wang, Qiao, Hodkinson, Luke, Olshansky, Moshe, Erwin, Tim, Appelbe, Bill, Tull, Dedreia L, Roessner, Ute, Bacic, Antony, McConville, Malcolm J, Likić, Vladimir A
Published in BMC bioinformatics (30.05.2012)
Published in BMC bioinformatics (30.05.2012)
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Journal Article
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
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Journal Article
iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences
Chen, Zhen, Zhao, Pei, Li, Fuyi, Leier, André, Marquez-Lago, Tatiana T, Wang, Yanan, Webb, Geoffrey I, Smith, A Ian, Daly, Roger J, Chou, Kuo-Chen, Song, Jiangning
Published in Bioinformatics (15.07.2018)
Published in Bioinformatics (15.07.2018)
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Journal Article
reciprocalspaceship: a Python library for crystallographic data analysis
Greisman, Jack B., Dalton, Kevin M., Hekstra, Doeke R.
Published in Journal of applied crystallography (01.10.2021)
Published in Journal of applied crystallography (01.10.2021)
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Journal Article
Scikit-Dimension: A Python Package for Intrinsic Dimension Estimation
Bac, Jonathan, Mirkes, Evgeny M., Gorban, Alexander N., Tyukin, Ivan, Zinovyev, Andrei
Published in Entropy (Basel, Switzerland) (19.10.2021)
Published in Entropy (Basel, Switzerland) (19.10.2021)
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Journal Article
refnx: neutron and X‐ray reflectometry analysis in Python
Nelson, Andrew R. J., Prescott, Stuart W.
Published in Journal of applied crystallography (01.02.2019)
Published in Journal of applied crystallography (01.02.2019)
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Journal Article