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Comparative Analysis of AI Models for Python Code Generation: A HumanEval Benchmark Study
Bayram, Ali, Menekse Dalveren, Gonca Gokce, Derawi, Mohammad
Published in Applied sciences (10.09.2025)
Published in Applied sciences (10.09.2025)
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Journal Article
gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Journal Article
Bioinformatic pipelines in Python with Leaf
Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)
Published in BMC bioinformatics (21.06.2013)
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Journal Article
Scalable Parallel Nonlinear Optimization with PyNumero and Parapint
Rodriguez, Jose S., Parker, Robert B., Laird, Carl D., Nicholson, Bethany L., Siirola, John D., Bynum, Michael L.
Published in INFORMS journal on computing (01.03.2023)
Published in INFORMS journal on computing (01.03.2023)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Probabilistic programming in Python using PyMC3
Salvatier, John, Wiecki, Thomas V., Fonnesbeck, Christopher
Published in PeerJ. Computer science (06.04.2016)
Published in PeerJ. Computer science (06.04.2016)
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Journal Article
APIScanner - Towards Automated Detection of Deprecated APIs in Python Libraries
Vadlamani, Aparna, Kalicheti, Rishitha, Chimalakonda, Sridhar
Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
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Conference Proceeding
Problem-Solving with Python: Modeling of Lanthanide-Shift Reagent Complexes
Zlatković, Dragan, Đorđević Zlatković, Miljana, Radulović, Niko
Published in Journal of chemical education (12.09.2023)
Published in Journal of chemical education (12.09.2023)
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Journal Article
A finite element based homogenization code in python: HomPy
Ozdilek, Emin Emre, Ozcakar, Egecan, Muhtaroglu, Nitel, Simsek, Ugur, Gulcan, Orhan, Sendur, Gullu Kiziltas
Published in Advances in engineering software (1992) (01.08.2024)
Published in Advances in engineering software (1992) (01.08.2024)
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Journal Article
Implementation of Biorhythm Graph with Trigonometric Functions using Python
Bee, Kang Gyu, Ye Won, Jeon
Published in MATTER International Journal of Science and Technology (15.07.2023)
Published in MATTER International Journal of Science and Technology (15.07.2023)
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Journal Article
IMPLEMENTATION OF BIORHYTHM GRAPH WITH TRIGONOMETRIC FUNCTIONS USING PYTHON
Bee, Kang Gyu, Won, Jeon Ye
Published in MATTER International Journal of Science and Technology (15.07.2023)
Published in MATTER International Journal of Science and Technology (15.07.2023)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article