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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article
Prediction of stunting and its socioeconomic determinants among adolescent girls in Ethiopia using machine learning algorithms
Zemariam, Alemu Birara, Abate, Biruk Beletew, Alamaw, Addis Wondmagegn, Lake, Eyob shitie, Yilak, Gizachew, Ayele, Mulat, Tilahun, Befkad Derese, Ngusie, Habtamu Setegn
Published in PloS one (24.01.2025)
Published in PloS one (24.01.2025)
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Journal Article
Python tools for structural tasks in chemistry
Ryzhkov, Fedor V., Ryzhkova, Yuliya E., Elinson, Michail N.
Published in Molecular diversity (01.08.2025)
Published in Molecular diversity (01.08.2025)
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Journal Article
PyImageJ: A library for integrating ImageJ and Python
Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Journal Article
pyMPSLib: A robust and scalable open-source Python library for mutiple-point statistical simulation
Chen, Qiyu, Zhou, Ruihong, Liu, Cui, Huang, Qianhong, Cui, Zhesi, Liu, Gang
Published in Earth science informatics (01.12.2023)
Published in Earth science informatics (01.12.2023)
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Journal Article
PyRates—A Python framework for rate-based neural simulations
Gast, Richard, Rose, Daniel, Salomon, Christoph, Möller, Harald E., Weiskopf, Nikolaus, Knösche, Thomas R.
Published in PloS one (16.12.2019)
Published in PloS one (16.12.2019)
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Journal Article
Towards understanding bugs in Python interpreters
Liu, Di, Feng, Yang, Yan, Yanyan, Xu, Baowen
Published in Empirical software engineering : an international journal (01.01.2023)
Published in Empirical software engineering : an international journal (01.01.2023)
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Journal Article
SAB: An open-access Python-based integrated platform for fully automated emergent sustainability assessment of biorefineries
Zarafshani, Hanie, Watjanatepin, Ponnapat, Navare, Kranti, Sauve, Giovanna, Van Acker, Karel
Published in The international journal of life cycle assessment (01.04.2024)
Published in The international journal of life cycle assessment (01.04.2024)
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Journal Article
Automatic Evaluation of Soybean Seed Traits Using RGB Image Data and a Python Algorithm
Ghimire, Amit, Kim, Seong-Hoon, Cho, Areum, Jang, Naeun, Ahn, Seonhwa, Islam, Mohammad Shafiqul, Mansoor, Sheikh, Chung, Yong Suk, Kim, Yoonha
Published in Plants (Basel) (28.08.2023)
Published in Plants (Basel) (28.08.2023)
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Journal Article
Python-Based Visual Classification Algorithm for Economic Text Big Data
Jiang, Yihuo, Guo, Xiaomei, Ni, Hongliang, Jiang, Wenbing
Published in Discrete dynamics in nature and society (2022)
Published in Discrete dynamics in nature and society (2022)
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Journal Article
SciKit Digital Health: Python Package for Streamlined Wearable Inertial Sensor Data Processing
Adamowicz, Lukas, Christakis, Yiorgos, Czech, Matthew D, Adamusiak, Tomasz
Published in JMIR mHealth and uHealth (21.04.2022)
Published in JMIR mHealth and uHealth (21.04.2022)
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Journal Article
Data Science Toolkit: An all-in-one python library to help researchers and practitioners in implementing data science-related algorithms with less effort
El Hachimi, Chouaib, Belaqziz, Salwa, Khabba, Saïd, Chehbouni, Abdelghani
Published in Software impacts (01.05.2022)
Published in Software impacts (01.05.2022)
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Journal Article