Vyzkoušejte nový nástroj s podporou AI
Summon Research Assistant
BETA
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
Get full text
Journal Article
Probabilistic programming in Python using PyMC3
Salvatier, John, Wiecki, Thomas V., Fonnesbeck, Christopher
Published in PeerJ. Computer science (06.04.2016)
Published in PeerJ. Computer science (06.04.2016)
Get full text
Journal Article
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
Get full text
Journal Article
MYRiAD: a multi-array room acoustic database
Dietzen, Thomas, Ali, Randall, Taseska, Maja, van Waterschoot, Toon
Published in EURASIP journal on audio, speech, and music processing (26.04.2023)
Published in EURASIP journal on audio, speech, and music processing (26.04.2023)
Get full text
Journal Article
FreeContact: fast and free software for protein contact prediction from residue co-evolution
Kaján, László, Hopf, Thomas A, Kalaš, Matúš, Marks, Debora S, Rost, Burkhard
Published in BMC bioinformatics (26.03.2014)
Published in BMC bioinformatics (26.03.2014)
Get full text
Journal Article
PyRates—A Python framework for rate-based neural simulations
Gast, Richard, Rose, Daniel, Salomon, Christoph, Möller, Harald E., Weiskopf, Nikolaus, Knösche, Thomas R.
Published in PloS one (16.12.2019)
Published in PloS one (16.12.2019)
Get full text
Journal Article
Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data
Maussion, Gilles, Thomas, Rhalena A., Demirova, Iveta, Gu, Gracia, Cai, Eddie, Chen, Carol X.-Q., Abdian, Narges, Strauss, Theodore J. P., Kelaï, Sabah, Nauleau-Javaudin, Angela, Beitel, Lenore K., Ramoz, Nicolas, Gorwood, Philip, Durcan, Thomas M.
Published in Scientific reports (29.10.2021)
Published in Scientific reports (29.10.2021)
Get full text
Journal Article
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics
Egea, Jose A, Henriques, David, Cokelaer, Thomas, Villaverde, Alejandro F, MacNamara, Aidan, Danciu, Diana-Patricia, Banga, Julio R, Saez-Rodriguez, Julio
Published in BMC bioinformatics (10.05.2014)
Published in BMC bioinformatics (10.05.2014)
Get full text
Journal Article
CFPy —A Python Package for Pre‐ and Postprocessing of the Conduit Flow Process of MODFLOW
Reimann, Thomas, Rudolph, Max Gustav, Grabow, Leonard, Noffz, Torsten
Published in Ground water (01.11.2023)
Published in Ground water (01.11.2023)
Get full text
Journal Article
The AlpArray Research Seismicity-Catalogue
Bagagli, M, Molinari, I, Diehl, T, Kissling, E, Giardini, D
Published in Geophysical journal international (23.07.2022)
Published in Geophysical journal international (23.07.2022)
Get full text
Journal Article
PyGeNN: A Python Library for GPU-Enhanced Neural Networks
Knight, James C., Komissarov, Anton, Nowotny, Thomas
Published in Frontiers in neuroinformatics (22.04.2021)
Published in Frontiers in neuroinformatics (22.04.2021)
Get full text
Journal Article
MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface
Husar, Adam, Ordyan, Mariam, Garcia, Guadalupe C., Yancey, Joel G., Saglam, Ali S., Faeder, James R., Bartol, Thomas M., Kennedy, Mary B., Sejnowski, Terrence J.
Published in PLoS computational biology (24.04.2024)
Published in PLoS computational biology (24.04.2024)
Get full text
Journal Article
FlowKit: A Python Toolkit for Integrated Manual and Automated Cytometry Analysis Workflows
White, Scott, Quinn, John, Enzor, Jennifer, Staats, Janet, Mosier, Sarah M., Almarode, James, Denny, Thomas N., Weinhold, Kent J., Ferrari, Guido, Chan, Cliburn
Published in Frontiers in immunology (05.11.2021)
Published in Frontiers in immunology (05.11.2021)
Get full text
Journal Article
Keanu: a novel visualization tool to explore biodiversity in metagenomes
Thrash, Adam, Arick, Mark, Barbato, Robyn A., Jones, Robert M., Douglas, Thomas A., Esdale, Julie, Perkins, Edward J., Garcia-Reyero, Natàlia
Published in BMC bioinformatics (14.03.2019)
Published in BMC bioinformatics (14.03.2019)
Get full text
Journal Article
GLAMbox: A Python toolbox for investigating the association between gaze allocation and decision behaviour
Molter, Felix, Thomas, Armin W, Heekeren, Hauke R, Mohr, Peter N. C
Published in PloS one (16.12.2019)
Published in PloS one (16.12.2019)
Get full text
Journal Article
PyRates—A code-generation tool for modeling dynamical systems in biology and beyond
Gast, Richard, Knösche, Thomas R., Kennedy, Ann
Published in PLoS computational biology (27.12.2023)
Published in PLoS computational biology (27.12.2023)
Get full text
Journal Article