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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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Journal Article

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Python for MATLAB Development - Extend MATLAB with 300,000+ Modules from the Python Package Index

by Danial, Albert
Year of Publication 2022

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eBook

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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

by Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)

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Journal Article

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pyPI (v1.3): Tropical Cyclone Potential Intensity Calculations in Python

by Gilford, Daniel M.
Published in Geoscientific Model Development (03.05.2021)

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Journal Article

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Artificial Intelligence with Python Cookbook - Proven Recipes for Applying AI Algorithms and Deep Learning Techniques Using TensorFlow 2.x and PyTorch 1.6

by Kumar, Ritesh, Auffarth, Ben
Year of Publication 2020

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eBook

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pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science

by Guerra, João Victor da Silva, Ribeiro-Filho, Helder Veras, Jara, Gabriel Ernesto, Bortot, Leandro Oliveira, Pereira, José Geraldo de Carvalho, Lopes-de-Oliveira, Paulo Sérgio
Published in BMC bioinformatics (20.12.2021)

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Journal Article

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Surface-wave tomography using SeisLib: a Python package for multiscale seismic imaging

by Magrini, Fabrizio, Lauro, Sebastian, Kästle, Emanuel, Boschi, Lapo
Published in Geophysical journal international (23.07.2022)

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Journal Article

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ETE: a python Environment for Tree Exploration

by Huerta-Cepas, Jaime, Dopazo, Joaquín, Gabaldón, Toni
Published in BMC bioinformatics (13.01.2010)

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Journal Article

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Core Imaging Library - Part I: a versatile Python framework for tomographic imaging

by Jørgensen, J. S., Ametova, E., Burca, G., Fardell, G., Papoutsellis, E., Pasca, E., Thielemans, K., Turner, M., Warr, R., Lionheart, W. R. B., Withers, P. J.
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (23.08.2021)

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Journal Article

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Comparison and Applications of Multiplying 2 by 2 Matrices Using Strassen Algorithm in Python IDLE, Jupyter Notebook, and Colab

by Gao, Shanzhen, Gao, Weizheng, Malomo, Olumide, Allagan, Julian D., Eyob, Ephrem, Su, Jianning
Published in 2023 Congress in Computer Science, Computer Engineering, & Applied Computing (CSCE) (24.07.2023)

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Conference Proceeding

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PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces

by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)

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Journal Article

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Python: An Ecosystem for Scientific Computing

by Perez, Fernando, Granger, Brian E., Hunter, John D.
Published in Computing in science & engineering (01.03.2011)

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Journal Article

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

by Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)

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Journal Article

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Artificial Intelligence with Python Cookbook: Proven Recipes for Applying AI Algorithms and Deep Learning Techniques Using TensorFlow 2. x and Pytorch 1. 6

by Kumar, Ritesh, Auffarth, Ben
Year of Publication 2020

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eBook

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Using Python Modules in Real-Time Plasma Systems for Fusion

by Ferron, Nicolo, Manduchi, Gabriele
Published in Sensors (Basel, Switzerland) (10.09.2022)

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Journal Article

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PyAGH: a python package to fast construct kinship matrices based on different levels of omic data

by Zhao, Wei, Qadri, Qamar Raza, Zhang, Zhenyang, Wang, Zhen, Pan, Yuchun, Wang, Qishan, Zhang, Zhe
Published in BMC bioinformatics (18.04.2023)

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Journal Article

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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support

by Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)

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Journal Article

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CFPy —A Python Package for Pre‐ and Postprocessing of the Conduit Flow Process of MODFLOW

by Reimann, Thomas, Rudolph, Max Gustav, Grabow, Leonard, Noffz, Torsten
Published in Ground water (01.11.2023)

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Journal Article

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New Python-based methods for data processing

by Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)

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Journal Article

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CBMOS: a GPU-enabled Python framework for the numerical study of center-based models

by Mathias, Sonja, Coulier, Adrien, Hellander, Andreas
Published in BMC bioinformatics (31.01.2022)

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Journal Article

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