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    Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          2FAST2Q: a general-purpose sequence search and counting program for FASTQ files
                                      
                                            Bravo, Afonso M.,                              Typas, Athanasios,                              Veening, Jan-Willem                              
Published in PeerJ (San Francisco, CA) (25.10.2022)
                   
      
      
                                                  Published in PeerJ (San Francisco, CA) (25.10.2022)
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          MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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          PyBoolNet: a python package for the generation, analysis and visualization of boolean networks
                                      
                                            Klarner, Hannes,                              Streck, Adam,                              Siebert, Heike                              
Published in Bioinformatics (Oxford, England) (01.03.2017)
                   
      
      
                                                  Published in Bioinformatics (Oxford, England) (01.03.2017)
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          D3p -- A Python Package for Differentially-Private Probabilistic Programming
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