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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Classification of cancer cells and gene selection based on microarray data using MOPSO algorithm
Rahimi, Mohammad Reza, Makarem, Dorna, Sarspy, Sliva, Mahdavi, Sobhan Akhavan, Albaghdadi, Mustafa Fahem, Armaghan, Seyed Mostafa
Published in Journal of cancer research and clinical oncology (01.11.2023)
Published in Journal of cancer research and clinical oncology (01.11.2023)
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Journal Article
Genetic algorithm based cancerous gene identification from microarray data using ensemble of filter methods
Ghosh, Manosij, Adhikary, Sukdev, Ghosh, Kushal Kanti, Sardar, Aritra, Begum, Shemim, Sarkar, Ram
Published in Medical & biological engineering & computing (01.01.2019)
Published in Medical & biological engineering & computing (01.01.2019)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
AltWOA: Altruistic Whale Optimization Algorithm for feature selection on microarray datasets
Kundu, Rohit, Chattopadhyay, Soham, Cuevas, Erik, Sarkar, Ram
Published in Computers in biology and medicine (01.05.2022)
Published in Computers in biology and medicine (01.05.2022)
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Journal Article
GPU-DAEMON: GPU algorithm design, data management & optimization template for array based big omics data
Awan, Muaaz Gul, Eslami, Taban, Saeed, Fahad
Published in Computers in biology and medicine (01.10.2018)
Published in Computers in biology and medicine (01.10.2018)
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Journal Article
Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks
Li, Yong, Liu, Lili, Bai, Xi, Cai, Hua, Ji, Wei, Guo, Dianjing, Zhu, Yanming
Published in BMC bioinformatics (19.10.2010)
Published in BMC bioinformatics (19.10.2010)
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Journal Article
Simulated annealing aided genetic algorithm for gene selection from microarray data
Marjit, Shyam, Bhattacharyya, Trinav, Chatterjee, Bitanu, Sarkar, Ram
Published in Computers in biology and medicine (01.05.2023)
Published in Computers in biology and medicine (01.05.2023)
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Journal Article
A time-correlated single photon counting SPAD array camera with a bespoke data-processing algorithm for lightsheet fluorescence lifetime imaging (FLIM) and FLIM videos
Nedbal, Jakub, Mattioli Della Rocca, Francesco, Ivanova, Iveta T., Allan, Andrew, Graham, Jeremy, Walker, Richard, Henderson, Robert K., Suhling, Klaus
Published in Scientific reports (27.03.2024)
Published in Scientific reports (27.03.2024)
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Journal Article
Toward a unified framework for interpreting machine-learning models in neuroimaging
Kohoutová, Lada, Heo, Juyeon, Cha, Sungmin, Lee, Sungwoo, Moon, Taesup, Wager, Tor D., Woo, Choong-Wan
Published in Nature protocols (01.04.2020)
Published in Nature protocols (01.04.2020)
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Journal Article
Bioinformatic pipelines in Python with Leaf
Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)
Published in BMC bioinformatics (21.06.2013)
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Journal Article
Portable BLAST-like algorithm library and its implementations for command line, Python, and R
Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)
Published in PloS one (30.11.2023)
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Journal Article