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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

by Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)

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Amazonian cacao-clone nibs discrimination using NIR spectroscopy coupled to naïve Bayes classifier and a new waveband selection approach

by Castro, Wilson, De-la-Torre, Miguel, Avila-George, Himer, Torres-Jimenez, Jose, Guivin, Alex, Acevedo-Juárez, Brenda
Published in Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy (05.04.2022)

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Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters

by Hensman, James, Lawrence, Neil D, Rattray, Magnus
Published in BMC bioinformatics (20.08.2013)

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Modified screening and ranking algorithm for copy number variation detection

by Xiao, Feifei, Min, Xiaoyi, Zhang, Heping
Published in Bioinformatics (01.05.2015)

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Performance evaluation of naive Bayes and support vector machine in type 2 Diabetes Mellitus gene expression microarray data

by Ramdaniah, Lawi, A, Syarif, S
Published in Journal of physics. Conference series (01.10.2019)

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Comparative study of classification algorithms for immunosignaturing data

by Kukreja, Muskan, Johnston, Stephen Albert, Stafford, Phillip
Published in BMC bioinformatics (21.06.2012)

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Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays

by Lin, Shin, Carvalho, Benilton, Cutler, David J, Arking, Dan E, Chakravarti, Aravinda, Irizarry, Rafael A
Published in Genome biology (03.04.2008)

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Natural Gradient Variational Bayes Without Fisher Matrix Analytic Calculation and Its Inversion

by Godichon-Baggioni, A., Nguyen, D., Tran, M.-N.
Published in Journal of the American Statistical Association (03.04.2025)

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Application of the stVBRD5-CKF Algorithm for Joint Calibration of a Combined Onboard Navigation System in Mining Operations

by Guo, Zihao, Chang, Xingguo, Wu, Jun
Published in IEEE sensors journal (15.07.2025)

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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

by Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)

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A CBS-based partitioned semi-implicit coupling algorithm for fluid–structure interaction using MCIBC method

by He, Tao
Published in Computer methods in applied mechanics and engineering (01.01.2016)

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Cancer Classification with a Cost-Sensitive Naive Bayes Stacking Ensemble

by Xiong, Yueling, Ye, Mingquan, Wu, Changrong
Published in Computational and mathematical methods in medicine (26.04.2021)

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Alternative empirical Bayes models for adjusting for batch effects in genomic studies

by Zhang, Yuqing, Jenkins, David F., Manimaran, Solaiappan, Johnson, W. Evan
Published in BMC bioinformatics (13.07.2018)

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Enhancing ontology-driven diagnostic reasoning with a symptom-dependency-aware Naïve Bayes classifier

by Shen, Ying, Li, Yaliang, Zheng, Hai-Tao, Tang, Buzhou, Yang, Min
Published in BMC bioinformatics (13.06.2019)

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Using mechanistic Bayesian networks to identify downstream targets of the Sonic Hedgehog pathway

by Shah, Abhik, Tenzen, Toyoaki, McMahon, Andrew P, Woolf, Peter J
Published in BMC bioinformatics (18.12.2009)

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An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation)

by Aryee, Martin J, Gutiérrez-Pabello, José A, Kramnik, Igor, Maiti, Tapabrata, Quackenbush, John
Published in BMC bioinformatics (10.12.2009)

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A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis

by Logsdon, Benjamin A, Hoffman, Gabriel E, Mezey, Jason G
Published in BMC bioinformatics (27.01.2010)

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An empirical Bayes approach to inferring large-scale gene association networks

by Schäfer, Juliane, Strimmer, Korbinian
Published in Bioinformatics (15.03.2005)

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Naive Bayes-Guided Bat Algorithm for Feature Selection

by Taha, Ahmed Majid, Chen, Soong-Der, Mustapha, Aida
Published in TheScientificWorld (01.01.2013)

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Sparse Bayes Tensor and DOA Tracking Inspired Channel Estimation for V2X Millimeter Wave Massive MIMO System

by Luo, Kaihua, Zhou, Xiaoping, Wang, Bin, Huang, Jifeng, Liu, Haichao
Published in Sensors (Basel, Switzerland) (10.06.2021)

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