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Portable BLAST-like algorithm library and its implementations for command line, Python, and R
Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)
Published in PloS one (30.11.2023)
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Journal Article
Mugen-UMAP: UMAP visualization and clustering of mutated genes in single-cell DNA sequencing data
Li, Teng, Zou, Yiran, Li, Xianghan, Wong, Thomas K. F., Rodrigo, Allen G.
Published in BMC bioinformatics (27.09.2024)
Published in BMC bioinformatics (27.09.2024)
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Journal Article
OMD Curation Toolkit: a workflow for in-house curation of public omics datasets
Piquer-Esteban, Samuel, Arnau, Vicente, Diaz, Wladimiro, Moya, Andrés
Published in BMC bioinformatics (09.05.2024)
Published in BMC bioinformatics (09.05.2024)
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Journal Article
Procrustes: A python library to find transformations that maximize the similarity between matrices
Meng, Fanwang, Richer, Michael, Tehrani, Alireza, La, Jonathan, Kim, Taewon David, Ayers, Paul W., Heidar-Zadeh, Farnaz
Published in Computer physics communications (01.07.2022)
Published in Computer physics communications (01.07.2022)
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Journal Article
Morphoscanner2.0: A new python module for analysis of molecular dynamics simulations
Fontana, Federico, Carlino, Calogero, Malik, Ashish, Gelain, Fabrizio
Published in PloS one (27.04.2023)
Published in PloS one (27.04.2023)
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Journal Article
PyXtal: A Python library for crystal structure generation and symmetry analysis
Fredericks, Scott, Parrish, Kevin, Sayre, Dean, Zhu, Qiang
Published in Computer physics communications (01.04.2021)
Published in Computer physics communications (01.04.2021)
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Journal Article
FastTENET: an accelerated TENET algorithm based on manycore computing in Python
Sung, Rakbin, Kim, Hyeonkyu, Kim, Junil, Lee, Daewon
Published in Bioinformatics (Oxford, England) (28.11.2024)
Published in Bioinformatics (Oxford, England) (28.11.2024)
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Journal Article
QuOCS: The quantum optimal control suite
Rossignolo, Marco, Reisser, Thomas, Marshall, Alastair, Rembold, Phila, Pagano, Alice, Vetter, Philipp J., Said, Ressa S., Müller, Matthias M., Motzoi, Felix, Calarco, Tommaso, Jelezko, Fedor, Montangero, Simone
Published in Computer physics communications (01.10.2023)
Published in Computer physics communications (01.10.2023)
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Journal Article