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Portable BLAST-like algorithm library and its implementations for command line, Python, and R
Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)
Published in PloS one (30.11.2023)
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Journal Article
PHOTONAI—A Python API for rapid machine learning model development
Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim
Published in PloS one (21.07.2021)
Published in PloS one (21.07.2021)
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Journal Article
Biotite: new tools for a versatile Python bioinformatics library
Kunzmann, Patrick, Müller, Tom David, Greil, Maximilian, Krumbach, Jan Hendrik, Anter, Jacob Marcel, Bauer, Daniel, Islam, Faisal, Hamacher, Kay
Published in BMC bioinformatics (05.06.2023)
Published in BMC bioinformatics (05.06.2023)
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Journal Article
PyRates—A Python framework for rate-based neural simulations
Gast, Richard, Rose, Daniel, Salomon, Christoph, Möller, Harald E., Weiskopf, Nikolaus, Knösche, Thomas R.
Published in PloS one (16.12.2019)
Published in PloS one (16.12.2019)
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Journal Article
ADOpy: a python package for adaptive design optimization
Yang, Jaeyeong, Pitt, Mark A., Ahn, Woo-Young, Myung, Jay I.
Published in Behavior research methods (01.04.2021)
Published in Behavior research methods (01.04.2021)
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Journal Article
pyNBS: a Python implementation for network-based stratification of tumor mutations
Huang, Justin K, Jia, Tongqiu, Carlin, Daniel E, Ideker, Trey
Published in Bioinformatics (15.08.2018)
Published in Bioinformatics (15.08.2018)
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Journal Article
Procrustes: A python library to find transformations that maximize the similarity between matrices
Meng, Fanwang, Richer, Michael, Tehrani, Alireza, La, Jonathan, Kim, Taewon David, Ayers, Paul W., Heidar-Zadeh, Farnaz
Published in Computer physics communications (01.07.2022)
Published in Computer physics communications (01.07.2022)
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Journal Article
QuOCS: The quantum optimal control suite
Rossignolo, Marco, Reisser, Thomas, Marshall, Alastair, Rembold, Phila, Pagano, Alice, Vetter, Philipp J., Said, Ressa S., Müller, Matthias M., Motzoi, Felix, Calarco, Tommaso, Jelezko, Fedor, Montangero, Simone
Published in Computer physics communications (01.10.2023)
Published in Computer physics communications (01.10.2023)
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Journal Article
Multiple Stellar Evolution: a population synthesis algorithm to model the stellar, binary, and dynamical evolution of multiple-star systems
Hamers, Adrian S, Rantala, Antti, Neunteufel, Patrick, Preece, Holly, Vynatheya, Pavan
Published in Monthly notices of the Royal Astronomical Society (01.04.2021)
Published in Monthly notices of the Royal Astronomical Society (01.04.2021)
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Journal Article
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Image processing for electron microscopy single-particle analysis using XMIPP
Scheres, Sjors H W, Núñez-Ramírez, Rafael, Sorzano, Carlos O S, Carazo, José María, Marabini, Roberto
Published in Nature protocols (01.06.2008)
Published in Nature protocols (01.06.2008)
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Journal Article
lca_algebraic: a library bringing symbolic calculus to LCA for comprehensive sensitivity analysis
Jolivet, Raphaël, Clavreul, Julie, Brière, Raphaël, Besseau, Romain, Prieur Vernat, Anne, Sauze, Marie, Blanc, Isabelle, Douziech, Mélanie, Pérez-López, Paula
Published in The international journal of life cycle assessment (01.12.2021)
Published in The international journal of life cycle assessment (01.12.2021)
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