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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Biotite: new tools for a versatile Python bioinformatics library
Kunzmann, Patrick, Müller, Tom David, Greil, Maximilian, Krumbach, Jan Hendrik, Anter, Jacob Marcel, Bauer, Daniel, Islam, Faisal, Hamacher, Kay
Published in BMC bioinformatics (05.06.2023)
Published in BMC bioinformatics (05.06.2023)
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Journal Article
RABiTPy: an open-source Python software for rapid, AI-powered bacterial tracking and analysis
Sen, Samyabrata, Vairagare, Indraneel, Gosai, Jitendrapuri, Shrivastava, Abhishek
Published in BMC bioinformatics (18.05.2025)
Published in BMC bioinformatics (18.05.2025)
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Journal Article
Portable beef-freshness detection platform based on colorimetric sensor array technology and bionic algorithms for total volatile basic nitrogen (TVB-N) determination
Xu, Weidong, He, Yingchao, Li, Jiaheng, Zhou, Jianwei, Xu, Enbo, Wang, Wenjun, Liu, Donghong
Published in Food control (01.08.2023)
Published in Food control (01.08.2023)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article
Mugen-UMAP: UMAP visualization and clustering of mutated genes in single-cell DNA sequencing data
Li, Teng, Zou, Yiran, Li, Xianghan, Wong, Thomas K. F., Rodrigo, Allen G.
Published in BMC bioinformatics (27.09.2024)
Published in BMC bioinformatics (27.09.2024)
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Journal Article
Bioinformatic pipelines in Python with Leaf
Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)
Published in BMC bioinformatics (21.06.2013)
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Journal Article
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
OMD Curation Toolkit: a workflow for in-house curation of public omics datasets
Piquer-Esteban, Samuel, Arnau, Vicente, Diaz, Wladimiro, Moya, Andrés
Published in BMC bioinformatics (09.05.2024)
Published in BMC bioinformatics (09.05.2024)
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Journal Article
Method of Multi-agent Path Planning for Lunar Robots Swarm Based on Improved CBS Algorithm
Feng, Haolong, Wu, Songtai, Liu, Shengyang, Song, Ting, Han, Fei
Published in Chinese Control Conference (28.07.2024)
Published in Chinese Control Conference (28.07.2024)
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Conference Proceeding
Path Planning Methods for Four-Way Shuttles in Dynamic Environments Based on A and CBS Algorithms
Lu, Jiansha, Jin, Qihao, Yuan, Jun, Ma, Jianping, Qi, Jin, Shao, Yiping
Published in Mathematics (Basel) (01.05.2025)
Published in Mathematics (Basel) (01.05.2025)
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Journal Article
Revisiting smart antenna array design with multiple interferers using basic adaptive beamforming algorithms: Comparative performance study with testbed results
Imtiaj, SK, Misra, Iti Saha, Bhattacharya, Sandipan
Published in Engineering reports (Hoboken, N.J.) (01.01.2021)
Published in Engineering reports (Hoboken, N.J.) (01.01.2021)
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Journal Article