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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools
O'Callaghan, Sean, De Souza, David P, Isaac, Andrew, Wang, Qiao, Hodkinson, Luke, Olshansky, Moshe, Erwin, Tim, Appelbe, Bill, Tull, Dedreia L, Roessner, Ute, Bacic, Antony, McConville, Malcolm J, Likić, Vladimir A
Published in BMC bioinformatics (30.05.2012)
Published in BMC bioinformatics (30.05.2012)
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Journal Article
PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)
Published in PloS one (06.08.2025)
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Journal Article
Paper-based triple-readout nanosensor for point-of-care detection of glucose in urine
Jin, Chengcheng, Yang, Shuang, Zheng, Junlei, Chai, Fang, Tian, Miaomiao
Published in Biosensors & bioelectronics (01.02.2025)
Published in Biosensors & bioelectronics (01.02.2025)
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Journal Article
Image processing for electron microscopy single-particle analysis using XMIPP
Scheres, Sjors H W, Núñez-Ramírez, Rafael, Sorzano, Carlos O S, Carazo, José María, Marabini, Roberto
Published in Nature protocols (01.06.2008)
Published in Nature protocols (01.06.2008)
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Journal Article
BrainSpace: a toolbox for the analysis of macroscale gradients in neuroimaging and connectomics datasets
Vos de Wael, Reinder, Benkarim, Oualid, Paquola, Casey, Lariviere, Sara, Royer, Jessica, Tavakol, Shahin, Xu, Ting, Hong, Seok-Jun, Langs, Georg, Valk, Sofie, Misic, Bratislav, Milham, Michael, Margulies, Daniel, Smallwood, Jonathan, Bernhardt, Boris C.
Published in Communications biology (05.03.2020)
Published in Communications biology (05.03.2020)
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Journal Article
EMUstack: An open source route to insightful electromagnetic computation via the Bloch mode scattering matrix method
Sturmberg, Björn C.P., Dossou, Kokou B., Lawrence, Felix J., Poulton, Christopher G., McPhedran, Ross C., Martijn de Sterke, C., Botten, Lindsay C.
Published in Computer physics communications (01.05.2016)
Published in Computer physics communications (01.05.2016)
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Journal Article