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    APIScanner - Towards Automated Detection of Deprecated APIs in Python Libraries
                                      
                                            Vadlamani, Aparna,                              Kalicheti, Rishitha,                              Chimalakonda, Sridhar                              
Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
                   
      
      
                                                  Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
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              Conference Proceeding
          
              
          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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              Journal Article
          
              
          Lead optimization mapper: automating free energy calculations for lead optimization
                                      
                                            Liu, Shuai,                              Wu, Yujie,                              Lin, Teng,                              Abel, Robert,                              Redmann, Jonathan P.,                              Summa, Christopher M.,                              Jaber, Vivian R.,                              Lim, Nathan M.,                              Mobley, David L.                              
Published in Journal of computer-aided molecular design (01.09.2013)
                   
      
      
                                                  Published in Journal of computer-aided molecular design (01.09.2013)
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              Journal Article
          
              
          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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              Journal Article
          
              
          Image processing for electron microscopy single-particle analysis using XMIPP
                                      
                                            Scheres, Sjors H W,                              Núñez-Ramírez, Rafael,                              Sorzano, Carlos O S,                              Carazo, José María,                              Marabini, Roberto                              
Published in Nature protocols (01.06.2008)
                   
      
      
                                                  Published in Nature protocols (01.06.2008)
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              Journal Article
          
              
          How Do Python Framework APIs Evolve? An Exploratory Study
                                      
                                            Zhang, Zhaoxu,                              Zhu, Hengcheng,                              Wen, Ming,                              Tao, Yida,                              Liu, Yepang,                              Xiong, Yingfei                              
Published in 2020 IEEE 27th International Conference on Software Analysis, Evolution and Reengineering (SANER) (01.02.2020)
                   
      
      
                                                  Published in 2020 IEEE 27th International Conference on Software Analysis, Evolution and Reengineering (SANER) (01.02.2020)
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              Conference Proceeding
          
              
          Bioinformatic pipelines in Python with Leaf
                                      
                                            Napolitano, Francesco,                              Mariani-Costantini, Renato,                              Tagliaferri, Roberto                              
Published in BMC bioinformatics (21.06.2013)
                   
      
      
                                                  Published in BMC bioinformatics (21.06.2013)
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              Journal Article
          
              
          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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          PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
                                      
                                            Georgi, Benjamin,                              Costa, Ivan Gesteira,                              Schliep, Alexander                              
Published in BMC bioinformatics (06.01.2010)
                   
      
      
                                                  Published in BMC bioinformatics (06.01.2010)
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          Performance improvement of dynamic PV array under partial shade conditions using M 2 algorithm
                                      
                                            Manjunath, Matam,                              Venugopal Reddy, Barry,                              Lehman, Brad                              
Published in IET renewable power generation (10.06.2019)
                   
      
      
                                                  Published in IET renewable power generation (10.06.2019)
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              Journal Article
          
              
          PyART: Python API Recommendation in Real-Time
                                      
                                            He, Xincheng,                              Xu, Lei,                              Zhang, Xiangyu,                              Hao, Rui,                              Feng, Yang,                              Xu, Baowen                              
Published in Proceedings / International Conference on Software Engineering (01.05.2021)
                   
      
      
                                                  Published in Proceedings / International Conference on Software Engineering (01.05.2021)
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              Conference Proceeding